View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17425_low_1 (Length: 432)
Name: NF17425_low_1
Description: NF17425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17425_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 107 - 419
Target Start/End: Original strand, 32995799 - 32996109
Alignment:
| Q |
107 |
tatatggtatttaaattagggaatatgtannnnnnnnnnngttgatacagagaaaagaaaataannnnnnnnatttgattaatgttaaaaggaatgatga |
206 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||| |||| |
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| T |
32995799 |
tatatggtatttaaattagggaatatgtattttttttt--gttgatacagagaaaagaaaataattttttttatttgattaatgctaaaaggaataatga |
32995896 |
T |
|
| Q |
207 |
actgataaaaatgatagtttatttgtatgtttgatcatataatgtagtatctgatgggtgtgtatcgtattaatagactatggtttgtaattgtatcgat |
306 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32995897 |
actgataaaaatgatagtttatttgtatatttgatcatataatgtagtatccgatgggtgtgtatcgtattaatagactatggtttgtaattgtatcgat |
32995996 |
T |
|
| Q |
307 |
gacatttgcaagatttatcgttaattataatatgccattgcgattaatttacatgcatccaagctcaaattgataatttaattttttgttgctgagtggg |
406 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32995997 |
gacatttgcaagatttatcgttaattataatatgtcattgcgattaatttacatgcatccaagctcaaattgataatttaattttttgttgttgagtggg |
32996096 |
T |
|
| Q |
407 |
gtgtttctgtgct |
419 |
Q |
| |
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||||||||||||| |
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| T |
32996097 |
gtgtttctgtgct |
32996109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 25 - 240
Target Start/End: Original strand, 7423681 - 7423896
Alignment:
| Q |
25 |
tttggcaataatttttgggcctgttactaatgtttgggatcatacatattattatgtatataatgaaaatgttaaccttacgtatatggtatttaaatta |
124 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7423681 |
tttggcaataatttttgggcttgttagtaatgtttgggatcatacatattattatgtatataatgaaaatgttaaccttacgtatatggtatttaaatta |
7423780 |
T |
|
| Q |
125 |
gggaatatgtannnnnnnnnnngttgatacagagaaaagaaaataannnnnnnnatttgattaatgttaaaaggaatgatgaactgataaaaatgatagt |
224 |
Q |
| |
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||||||||||| ||||||||| |||||||||||||| |||||||||||| |||||||||| |||||| ||||||||||||||| |
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| T |
7423781 |
gggaatatgtatttttttttttgttgatacaaagaaaagaaaataattttttttatttgattaatgctaaaaggaattatgaaccgataaaaatgatagt |
7423880 |
T |
|
| Q |
225 |
ttatttgtatgtttga |
240 |
Q |
| |
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|||||||||||||||| |
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| T |
7423881 |
ttatttgtatgtttga |
7423896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 52 - 217
Target Start/End: Complemental strand, 25877420 - 25877256
Alignment:
| Q |
52 |
taatgtttgggatcatacatattattatgtatataatgaaaatgttaaccttacgtatatggtatttaaattagggaatatgtannnnnnnnnnngttga |
151 |
Q |
| |
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|||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25877420 |
taatgtttcggattatacatattattatgtatataatgaaaatattaaccttacgtatatggtatttaaattagggaatatgta-ttttttttttgttga |
25877322 |
T |
|
| Q |
152 |
tacagagaaaagaaaataannnnnnnnatttgattaatgttaaaaggaatgatgaactgataaaaa |
217 |
Q |
| |
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|||| |||||||||||||| |||||||||||| |||||||||| ||||||||||||||| |
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|
| T |
25877321 |
tacaaagaaaagaaaataattttttttatttgattaatgctaaaaggaattatgaactgataaaaa |
25877256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 25 - 240
Target Start/End: Complemental strand, 42545416 - 42545204
Alignment:
| Q |
25 |
tttggcaataatttttgggcctgttactaatgtttgggatcatacatattattatgtatataatgaaaatgttaaccttacgtatatggtatttaaatta |
124 |
Q |
| |
|
||||||||||||||||| || ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42545416 |
tttggcaataatttttgagcttgttagtaatatttgggatcatacatattattatgtatataatgaaaatgttaaccttacgtatatggtatttaaatta |
42545317 |
T |
|
| Q |
125 |
gggaatatgtannnnnnnnnnngttgatacagagaaaagaaaataannnnnnnnatttgattaatgttaaaaggaatgatgaactgataaaaatgatagt |
224 |
Q |
| |
|
|||||||||| ||| |||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42545316 |
gggaatatgt---ttttttttttttgttacaaagaaaagaaaataattttttttatttgattaatgttaaaaggaattatgaactgataaaaatgatagt |
42545220 |
T |
|
| Q |
225 |
ttatttgtatgtttga |
240 |
Q |
| |
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|||||||||||||||| |
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| T |
42545219 |
ttatttgtatgtttga |
42545204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 54713502 - 54713561
Alignment:
| Q |
179 |
atttgattaatgttaaaaggaatgatgaactgataaaaatgatagtttatttgtatgttt |
238 |
Q |
| |
|
|||||||||||| |||||||||| || ||||| ||||||||| ||||||||||||||||| |
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| T |
54713502 |
atttgattaatgctaaaaggaataatcaactgttaaaaatgaaagtttatttgtatgttt |
54713561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 25 - 240
Target Start/End: Original strand, 279740 - 279952
Alignment:
| Q |
25 |
tttggcaataatttttgggcctgttactaatgtttgggatcatacatattattatgtatataatgaaaatgttaaccttacgtatatggtatttaaatta |
124 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
279740 |
tttggcaataatttttgggcttgttagtaatgtttgagatcata-atattattatgtatataatgaaaatgttaaccttacgtgtatggtatttaaatta |
279838 |
T |
|
| Q |
125 |
gggaatatgtannnnnnnnnnngttgatacagagaaaagaaaataannnnnnnnatttgattaatgttaaaaggaatgatgaactgataaaaatgatagt |
224 |
Q |
| |
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||||||||||| ||||||||| | |||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
279839 |
gggaatatgta--tttttttttgttgatacaaaaaaaagaaaataattttttttatttgattaatgctaaaaggaattatgaactgataaaaatgatagt |
279936 |
T |
|
| Q |
225 |
ttatttgtatgtttga |
240 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
279937 |
ttatttgtatgtttga |
279952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 25 - 238
Target Start/End: Original strand, 24727988 - 24728201
Alignment:
| Q |
25 |
tttggcaataatttttgggcctgttactaatgtttgggatcatacatattattatgtatataatgaaaatgttaaccttacgtatatggtatttaaatta |
124 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
24727988 |
tttggcaataatttttgggcatgttactaatgtttgggatcatacatattattatgtatataatgaaaatgttaaccttacgtatacggtttttaaatta |
24728087 |
T |
|
| Q |
125 |
gggaatatgta--nnnnnnnnnnngttgatacagagaaaagaaaataannnnnnnnatttgattaatgttaaaaggaatgatgaactgataaaaatgata |
222 |
Q |
| |
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||||||||||| ||||||||| | |||||||||||| ||||||||| || |||||||||| |||||||||||||||||||| |
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|
| T |
24728088 |
gggaatatgtattattttttttttgttgataca-aaaaaagaaaataa-tttttttatttgattattgctaaaaggaataatgaactgataaaaatgata |
24728185 |
T |
|
| Q |
223 |
gtttatttgtatgttt |
238 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
24728186 |
gtttatttgtatgttt |
24728201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 31148136 - 31148089
Alignment:
| Q |
179 |
atttgattaatgttaaaaggaatgatgaactgataaaaatgatagttt |
226 |
Q |
| |
|
|||||||||||| |||||||||| || |||| |||||||||||||||| |
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|
| T |
31148136 |
atttgattaatgctaaaaggaataatcaactaataaaaatgatagttt |
31148089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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