View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17425_low_4 (Length: 332)
Name: NF17425_low_4
Description: NF17425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17425_low_4 |
 | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 31)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 15 - 316
Target Start/End: Original strand, 4471186 - 4471487
Alignment:
| Q |
15 |
caaagggttgaaggaagtccgtcatgattgatcgaaaaaaggagtgtatgtcttgaataagatcaccactttccattacagtaaaaccatttggaatggt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4471186 |
caaagggttgaaggaagtccgtcatgattgatcgaaaaaaggagtgtatgtcttgaataagatcaccactttccattgcagtaaaaccatttggaatggt |
4471285 |
T |
|
| Q |
115 |
ctcaaagttaatgtcagtaaaaccatcaagagaatcaggacctcttgaattgagcaaggctttgtgattgtattcagtgttgacaaacgttatgtgaaag |
214 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4471286 |
ctcaaagttaaagtcagtgaaaccatcaagagaatcaggacctcttgaattgagcaaggctttgtgattgtattcagtgttgacaaacgttatgtgaaag |
4471385 |
T |
|
| Q |
215 |
cctctaaggtgaagaagctttgctagtttcaacaatgcattgatatggccttgagctggacatggaatcaatacagcatgtggctttgtctttgcaacat |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
4471386 |
cctctaaggtgaagaagctttgctagtttcaacaatgcattgatatggccttgagctggacatggaatcaatacagcatgtggctttgtctttgcaaaat |
4471485 |
T |
|
| Q |
315 |
ta |
316 |
Q |
| |
|
|| |
|
|
| T |
4471486 |
ta |
4471487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 4462480 - 4462780
Alignment:
| Q |
16 |
aaagggttgaaggaagtccgtcatgattgatcgaaaaaaggagtgtatgtcttgaataagatcaccactttccattacagtaaaaccatttggaatggtc |
115 |
Q |
| |
|
||||||||||| ||||| | ||||||||||| ||||||| |||||| |||||||| || ||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
4462480 |
aaagggttgaatgaagttcatcatgattgattgaaaaaataagtgtacgtcttgaaaaacatcaccagtttccattgttgtaaaaccatttggaatggtc |
4462579 |
T |
|
| Q |
116 |
tcaaagttaatgtcagtaaaaccatcaagagaatcaggacctcttgaattgagcaaggctttgtgattgtattcagtgttgacaaacgttatgtgaaagc |
215 |
Q |
| |
|
|||||||||| |||||| |||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
4462580 |
tcaaagttaaagtcagtgaaaccatctagagaattaggacctcttgaattgagcaagcaattgtgattgtattcagtgttgacaaaggttatgtgaaaac |
4462679 |
T |
|
| Q |
216 |
ctctaaggtgaagaagctttgctagtttcaacaatgcattgatatggccttgagctggacatggaatcaatacagcatgtggctttgtctttgcaacatt |
315 |
Q |
| |
|
||||||||||||| || ||| ||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
4462680 |
ctctaaggtgaagtagttttcctagtttcaacaatgcattgatatggccttgggatggacatggaatcaacacagcatgtggctttgtctttgcaaaatt |
4462779 |
T |
|
| Q |
316 |
a |
316 |
Q |
| |
|
| |
|
|
| T |
4462780 |
a |
4462780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 15 - 316
Target Start/End: Complemental strand, 4265916 - 4265612
Alignment:
| Q |
15 |
caaagggttgaaggaagtccgtcatgattgatcgaaaaaaggagtgtatgtcttgaataagatcaccact---ttccattacagtaaaaccatttggaat |
111 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| | | || | || |||||||||| || ||||||| | ||||||| ||| | ||||| ||| || |
|
|
| T |
4265916 |
caaagggttgaaggaagttcgtcatgattgattgcacaagagggtatatgtcttgagtagcatcaccattgccttccattggagttagaccatctggtat |
4265817 |
T |
|
| Q |
112 |
ggtctcaaagttaatgtcagtaaaaccatcaagagaatcaggacctcttgaattgagcaaggctttgtgattgtattcagtgttgacaaacgttatgtga |
211 |
Q |
| |
|
||||||||| |||| |||| | |||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4265816 |
ggtctcaaacttaaagtcactgaaaccatcaagagaatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttgacaaaggttatgtga |
4265717 |
T |
|
| Q |
212 |
aagcctctaaggtgaagaagctttgctagtttcaacaatgcattgatatggccttgagctggacatggaatcaatacagcatgtggctttgtctttgcaa |
311 |
Q |
| |
|
|||||||||||||||||||||||| |||| || |||||||||||||||||||||||| |||| ||||||||| |||||||||||||||| |||||||| |
|
|
| T |
4265716 |
aagcctctaaggtgaagaagctttcctagattgaacaatgcattgatatggccttgaaatggagctggaatcaacacagcatgtggctttggctttgcaa |
4265617 |
T |
|
| Q |
312 |
catta |
316 |
Q |
| |
|
|||| |
|
|
| T |
4265616 |
aatta |
4265612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 98 - 311
Target Start/End: Original strand, 4618656 - 4618869
Alignment:
| Q |
98 |
aaaccatttggaatggtctcaaagttaatgtcagtaaaaccatcaagagaatcaggacctcttgaattgagcaaggctttgtgattgtattcagtgttga |
197 |
Q |
| |
|
||||||| ||||||| |||||||||||| ||| || |||||||||| || | ||||||||||| ||||||||| ||||||||||||||| ||||| | |
|
|
| T |
4618656 |
aaaccatctggaatgctctcaaagttaaagtccgtgaaaccatcaaaagcctttggacctcttgatttgagcaagcgtttgtgattgtattcggtgttaa |
4618755 |
T |
|
| Q |
198 |
caaacgttatgtgaaagcctctaaggtgaagaagctttgctagtttcaacaatgcattgatatggccttgagctggacatggaatcaatacagcatgtgg |
297 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||| ||||||||| ||| ||||||| |
|
|
| T |
4618756 |
caaaggttatgtgaaagcctctaaggtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtgg |
4618855 |
T |
|
| Q |
298 |
ctttgtctttgcaa |
311 |
Q |
| |
|
||| | ||||||| |
|
|
| T |
4618856 |
ttttctgtttgcaa |
4618869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 98 - 301
Target Start/End: Complemental strand, 4488970 - 4488767
Alignment:
| Q |
98 |
aaaccatttggaatggtctcaaagttaatgtcagtaaaaccatcaagagaatcaggacctcttgaattgagcaaggctttgtgattgtattcagtgttga |
197 |
Q |
| |
|
||||||| |||||| ||||||||| ||| ||||| |||||||||| | || ||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
4488970 |
aaaccatctggaatagtctcaaagctaaaatcagttaaaccatcaaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttga |
4488871 |
T |
|
| Q |
198 |
caaacgttatgtgaaagcctctaaggtgaagaagctttgctagtttcaacaatgcattgatatggccttgagctggacatggaatcaatacagcatgtgg |
297 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| || ||| |||||||||||||||||||||||||||||||| ||||| |||| | || || |||||||| |
|
|
| T |
4488870 |
caaaggttatgtgaaatcctctaaggtgaagtagttttcctagtttcaacaatgcattgatatggccttgaactggaaatggtgttaacactgcatgtgg |
4488771 |
T |
|
| Q |
298 |
cttt |
301 |
Q |
| |
|
|||| |
|
|
| T |
4488770 |
cttt |
4488767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 113 - 316
Target Start/End: Original strand, 4507281 - 4507484
Alignment:
| Q |
113 |
gtctcaaagttaatgtcagtaaaaccatcaagagaatcaggacctcttgaattgagcaaggctttgtgattgtattcagtgttgacaaacgttatgtgaa |
212 |
Q |
| |
|
||||||||||||| ||||| |||||||||| | || ||||||||| ||||||||| ||||||||||||||| ||||| ||||| |||||||||| |
|
|
| T |
4507281 |
gtctcaaagttaaaatcagtgaaaccatcaaaggcattttcacctcttgatttgagcaagcgtttgtgattgtattcggtgttaacaaaggttatgtgaa |
4507380 |
T |
|
| Q |
213 |
agcctctaaggtgaagaagctttgctagtttcaacaatgcattgatatggccttgagctggacatggaatcaatacagcatgtggctttgtctttgcaac |
312 |
Q |
| |
|
|||||| ||||||||||||||| |||||||| ||||||| ||||||||||||||||| |||| |||||||||| ||||||||||| ||| ||||||||| |
|
|
| T |
4507381 |
agcctcgaaggtgaagaagcttagctagtttgaacaatggattgatatggccttgagttggatatggaatcaacacagcatgtggttttctctttgcaaa |
4507480 |
T |
|
| Q |
313 |
atta |
316 |
Q |
| |
|
|||| |
|
|
| T |
4507481 |
atta |
4507484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 98 - 301
Target Start/End: Original strand, 4575810 - 4576013
Alignment:
| Q |
98 |
aaaccatttggaatggtctcaaagttaatgtcagtaaaaccatcaagagaatcaggacctcttgaattgagcaaggctttgtgattgtattcagtgttga |
197 |
Q |
| |
|
||||||| ||| || ||||||||||||| |||||| |||||||||| | || ||||||||| |||||||| ||||||||||||||||||||| | |
|
|
| T |
4575810 |
aaaccatctggtatagtctcaaagttaaagtcagtgaaaccatcaaaggcattttcacctcttgatttgagcaaacgtttgtgattgtattcagtgttaa |
4575909 |
T |
|
| Q |
198 |
caaacgttatgtgaaagcctctaaggtgaagaagctttgctagtttcaacaatgcattgatatggccttgagctggacatggaatcaatacagcatgtgg |
297 |
Q |
| |
|
|||| |||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||| ||||| ||||| | || || |||||||| |
|
|
| T |
4575910 |
caaaggttatgtgaaagcctctaaggtgaagcagttttgctattttcaacaatgcattgatatggccttgaactggaaatggagttaacactgcatgtgg |
4576009 |
T |
|
| Q |
298 |
cttt |
301 |
Q |
| |
|
|||| |
|
|
| T |
4576010 |
cttt |
4576013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 98 - 301
Target Start/End: Original strand, 4623662 - 4623865
Alignment:
| Q |
98 |
aaaccatttggaatggtctcaaagttaatgtcagtaaaaccatcaagagaatcaggacctcttgaattgagcaaggctttgtgattgtattcagtgttga |
197 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| || |||||||||| | | ||||||||||| ||||||||| ||||||||||||||| |||| |
|
|
| T |
4623662 |
aaaccatctggaatggtctcaaagttaaagtccgtgaaaccatcaaaggcctttggacctcttgatttgagcaagcgtttgtgattgtattcggtgtgac |
4623761 |
T |
|
| Q |
198 |
caaacgttatgtgaaagcctctaaggtgaagaagctttgctagtttcaacaatgcattgatatggccttgagctggacatggaatcaatacagcatgtgg |
297 |
Q |
| |
|
|||| ||||||||||||||| |||||| |||||||||||||||||| ||||||| ||||||||| |||||| ||||| ||| |||||| ||||||||||| |
|
|
| T |
4623762 |
caaaggttatgtgaaagcctttaaggtaaagaagctttgctagtttgaacaatggattgatatgaccttgaactggatatgcaatcaacacagcatgtgg |
4623861 |
T |
|
| Q |
298 |
cttt |
301 |
Q |
| |
|
|||| |
|
|
| T |
4623862 |
cttt |
4623865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 154 - 301
Target Start/End: Complemental strand, 4258893 - 4258746
Alignment:
| Q |
154 |
acctcttgaattgagcaaggctttgtgattgtattcagtgttgacaaacgttatgtgaaagcctctaaggtgaagaagctttgctagtttcaacaatgca |
253 |
Q |
| |
|
||||||||| |||||||| ||||||||| ||||||||||||||||| ||||||||||| ||| ||| |||||||||||| |||||||| ||||||| | |
|
|
| T |
4258893 |
acctcttgatttgagcaaacgtttgtgattatattcagtgttgacaaaggttatgtgaaaacctttaaagtgaagaagcttagctagtttgaacaatgga |
4258794 |
T |
|
| Q |
254 |
ttgatatggccttgagctggacatggaatcaatacagcatgtggcttt |
301 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
4258793 |
ttgatatggccttgagctggatatggaatcaacacagcatgtggcttt |
4258746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 98 - 297
Target Start/End: Original strand, 4558480 - 4558679
Alignment:
| Q |
98 |
aaaccatttggaatggtctcaaagttaatgtcagtaaaaccatcaagagaatcaggacctcttgaattgagcaaggctttgtgattgtattcagtgttga |
197 |
Q |
| |
|
||||||| ||||| ||||||||| ||| ||||| |||||||||| | || ||||||||||| |||||||| |||||| |||||||||||||| | |
|
|
| T |
4558480 |
aaaccatccggaatagtctcaaagctaaaatcagtgaaaccatcaaaggcatttggacctcttgacttgagcaaccgtttgtggttgtattcagtgttta |
4558579 |
T |
|
| Q |
198 |
caaacgttatgtgaaagcctctaaggtgaagaagctttgctagtttcaacaatgcattgatatggccttgagctggacatggaatcaatacagcatgtgg |
297 |
Q |
| |
|
|| | ||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||| ||||||| || ||||||||||| |
|
|
| T |
4558580 |
cataggttatgtgaaatcctctaaggtgaagaagttttgctagtttcaacaatggattgatatggccttgaactggatatggaattaacacagcatgtgg |
4558679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 85 - 311
Target Start/End: Original strand, 3173345 - 3173571
Alignment:
| Q |
85 |
ttccattacagtaaaaccatttggaatggtctcaaagttaatgtcagtaaaaccatcaagagaatcaggacctcttgaattgagcaaggctttgtgattg |
184 |
Q |
| |
|
||||||| ||| ||||||| ||| || ||||||||||||| ||| | |||||||||| | || ||||| |||| |||||||| |||||||||| |
|
|
| T |
3173345 |
ttccattgaagttaaaccatctggtatagtctcaaagttaaaatcattgaaaccatcaaaggcatttggaccctttgatttgagcaaccgtttgtgattg |
3173444 |
T |
|
| Q |
185 |
tattcagtgttgacaaacgttatgtgaaagcctctaaggtgaagaagctttgctagtttcaacaatgcattgatatggccttgagctggacatggaatca |
284 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||| ||||| ||||| | | |
|
|
| T |
3173445 |
tattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagtagttttgctagtttcaacaatgcattgatatggccttgaactggatatggagtta |
3173544 |
T |
|
| Q |
285 |
atacagcatgtggctttgtctttgcaa |
311 |
Q |
| |
|
| || |||||||| ||| ||||||||| |
|
|
| T |
3173545 |
acactgcatgtggttttctctttgcaa |
3173571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 154 - 300
Target Start/End: Original strand, 4627561 - 4627707
Alignment:
| Q |
154 |
acctcttgaattgagcaaggctttgtgattgtattcagtgttgacaaacgttatgtgaaagcctctaaggtgaagaagctttgctagtttcaacaatgca |
253 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||| ||||||||| | |
|
|
| T |
4627561 |
acctcttgatttgagcaaacgtttgtgattgtattcagtgttgacaaaggttatgtgaaagcctctaaggtgaagtaattttgctagtatcaacaatgga |
4627660 |
T |
|
| Q |
254 |
ttgatatggccttgagctggacatggaatcaatacagcatgtggctt |
300 |
Q |
| |
|
||||||||||||||| |||| |||||||||| |||||||||||||| |
|
|
| T |
4627661 |
ttgatatggccttgaagtggaaatggaatcaacacagcatgtggctt |
4627707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 98 - 301
Target Start/End: Original strand, 4581369 - 4581572
Alignment:
| Q |
98 |
aaaccatttggaatggtctcaaagttaatgtcagtaaaaccatcaagagaatcaggacctcttgaattgagcaaggctttgtgattgtattcagtgttga |
197 |
Q |
| |
|
||||||| |||||| ||||||||| ||| || || |||||||||| | | ||||||||||| ||||||||| ||||||||||||||| ||||||| |
|
|
| T |
4581369 |
aaaccatctggaatagtctcaaaggtaaaatcggtgaaaccatcaaacgcttttggacctcttgatttgagcaagcgtttgtgattgtattcggtgttga |
4581468 |
T |
|
| Q |
198 |
caaacgttatgtgaaagcctctaaggtgaagaagctttgctagtttcaacaatgcattgatatggccttgagctggacatggaatcaatacagcatgtgg |
297 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| | | |||| | ||||||| |||||| |||| |||||||||| || |||||||| |
|
|
| T |
4581469 |
caaaggttatgtgaaagcctctaaggtgaagaagctttgctagtgttattaatggagtgatatgtccttgaagtggatatggaatcaacactgcatgtgg |
4581568 |
T |
|
| Q |
298 |
cttt |
301 |
Q |
| |
|
|||| |
|
|
| T |
4581569 |
cttt |
4581572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 175 - 297
Target Start/End: Original strand, 4482297 - 4482419
Alignment:
| Q |
175 |
tttgtgattgtattcagtgttgacaaacgttatgtgaaagcctctaaggtgaagaagctttgctagtttcaacaatgcattgatatggccttgagctgga |
274 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4482297 |
tttgtgattgtattcggtgttgacaaaggttatgtgaaagcctctaaggtgaagtagttttcctattttcaacaatgcattgatatggccttgagctgga |
4482396 |
T |
|
| Q |
275 |
catggaatcaatacagcatgtgg |
297 |
Q |
| |
|
||||| |||| || |||||||| |
|
|
| T |
4482397 |
aatggagtcaacactgcatgtgg |
4482419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 152 - 302
Target Start/End: Complemental strand, 4612437 - 4612287
Alignment:
| Q |
152 |
ggacctcttgaattgagcaaggctttgtgattgtattcagtgttgacaaacgttatgtgaaagcctctaaggtgaagaagctttgctagtttcaacaatg |
251 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||||||||| | |||| |
|
|
| T |
4612437 |
ggacctcttgatttgagcaagcgtttgtgattgtattcggtgttgacgaatgttatgtgaaagcctctaaggtgaagaagttttgctagtttgattaatg |
4612338 |
T |
|
| Q |
252 |
cattgatatggccttgagctggacatggaatcaatacagcatgtggctttg |
302 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| || || |||||||| |||| |
|
|
| T |
4612337 |
gattgatatggccttgaactggatatggaattaacactgcatgtggttttg |
4612287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 151 - 295
Target Start/End: Original strand, 4603518 - 4603662
Alignment:
| Q |
151 |
aggacctcttgaattgagcaaggctttgtgattgtattcagtgttgacaaacgttatgtgaaagcctctaaggtgaagaagctttgctagtttcaacaat |
250 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| || |||||||||||||||| | |
|
|
| T |
4603518 |
aggacctcttgatttgagcaaacgtttgtgattgtattcggtgttgacaaaggttatgtgaaatcctctaaggtgaaatagttttgctagtttcaacatt |
4603617 |
T |
|
| Q |
251 |
gcattgatatggccttgagctggacatggaatcaatacagcatgt |
295 |
Q |
| |
|
| |||||||||||||||| |||| |||||||||| ||||||||| |
|
|
| T |
4603618 |
ggattgatatggccttgaagtggatatggaatcaacacagcatgt |
4603662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 134 - 297
Target Start/End: Complemental strand, 4513716 - 4513553
Alignment:
| Q |
134 |
aaaccatcaagagaatcaggacctcttgaattgagcaaggctttgtgattgtattcagtgttgacaaacgttatgtgaaagcctctaaggtgaagaagct |
233 |
Q |
| |
|
|||||||||| || || |||||||||||| |||||||| ||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| || | |
|
|
| T |
4513716 |
aaaccatcaaaagcattaggacctcttgatttgagcaaacgtttgtgattgtattcggtgttaacaaaggttatgtgaaagcctctaaggtgaagtagtt |
4513617 |
T |
|
| Q |
234 |
ttgctagtttcaacaatgcattgatatggccttgagctggacatggaatcaatacagcatgtgg |
297 |
Q |
| |
|
|||||| | | |||| || |||||||||||||||| |||| |||||||||| ||||||||||| |
|
|
| T |
4513616 |
ttgctaatctgaacattggattgatatggccttgaagtggatatggaatcaacacagcatgtgg |
4513553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 98 - 300
Target Start/End: Original strand, 4517695 - 4517897
Alignment:
| Q |
98 |
aaaccatttggaatggtctcaaagttaatgtcagtaaaaccatcaagagaatcaggacctcttgaattgagcaaggctttgtgattgtattcagtgttga |
197 |
Q |
| |
|
||||||| |||||| ||||||||| ||| ||||| |||||||||| | | ||||||||||| |||||||| ||||||||||||||| ||||||| |
|
|
| T |
4517695 |
aaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcttttggacctcttgatttgagcaaacgtttgtgattgtattcggtgttga |
4517794 |
T |
|
| Q |
198 |
caaacgttatgtgaaagcctctaaggtgaagaagctttgctagtttcaacaatgcattgatatggccttgagctggacatggaatcaatacagcatgtgg |
297 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||| ||||||||||| ||||| | |||||||||||||||| |||| ||||| | | || |||||||| |
|
|
| T |
4517795 |
caaaggttatgtgaaagcctctaagatgaagaagttttgctagttttaacaacggattgatatggccttgaagtggatatggagttatcactgcatgtgg |
4517894 |
T |
|
| Q |
298 |
ctt |
300 |
Q |
| |
|
||| |
|
|
| T |
4517895 |
ctt |
4517897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 153 - 297
Target Start/End: Original strand, 4572376 - 4572520
Alignment:
| Q |
153 |
gacctcttgaattgagcaaggctttgtgattgtattcagtgttgacaaacgttatgtgaaagcctctaaggtgaagaagctttgctagtttcaacaatgc |
252 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||| ||| | ||||||||||| |||||||||||||||| |||||||||| |||||||| |
|
|
| T |
4572376 |
gacctcttgacttgagcaaccgtttgtgattgtattcagtgtttacataggttatgtgaaaacctctaaggtgaagaaattttgctagttgcaacaatgg |
4572475 |
T |
|
| Q |
253 |
attgatatggccttgagctggacatggaatcaatacagcatgtgg |
297 |
Q |
| |
|
|||||||||||||||| ||||| |||| || || ||||||||||| |
|
|
| T |
4572476 |
attgatatggccttgaactggatatgggattaacacagcatgtgg |
4572520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 98 - 294
Target Start/End: Original strand, 4586987 - 4587183
Alignment:
| Q |
98 |
aaaccatttggaatggtctcaaagttaatgtcagtaaaaccatcaagagaatcaggacctcttgaattgagcaaggctttgtgattgtattcagtgttga |
197 |
Q |
| |
|
||||||| |||||| ||||||||| ||| ||||| ||| |||||| | || ||| ||||||| || ||||| ||||||||||||||||||||| | |
|
|
| T |
4586987 |
aaaccatctggaatagtctcaaagctaaaatcagttaaatcatcaaaggcatttggagctcttgacttaagcaaccgtttgtgattgtattcagtgttta |
4587086 |
T |
|
| Q |
198 |
caaacgttatgtgaaagcctctaaggtgaagaagctttgctagtttcaacaatgcattgatatggccttgagctggacatggaatcaatacagcatg |
294 |
Q |
| |
|
|||| ||||||||||| |||| |||||||||||| || |||||||||||||||| |||||||||||||||| ||||| |||| || || |||||||| |
|
|
| T |
4587087 |
caaaggttatgtgaaatcctcgaaggtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatg |
4587183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 152 - 311
Target Start/End: Original strand, 4594419 - 4594578
Alignment:
| Q |
152 |
ggacctcttgaattgagcaaggctttgtgattgtattcagtgttgacaaacgttatgtgaaagcctctaaggtgaagaagctttgctagtttcaacaatg |
251 |
Q |
| |
|
||||||||||| |||||||| ||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
4594419 |
ggacctcttgatttgagcaaacgtttatgattgtattcagtgttgacaaaggttatgtgaaatcctctaaggtgaagaagttttgcaagtttgaacaatg |
4594518 |
T |
|
| Q |
252 |
cattgatatggccttgagctggacatggaatcaatacagcatgtggctttgtctttgcaa |
311 |
Q |
| |
|
||| ||||| |||||| |||| ||||||||| ||||||||||| ||| | ||||||| |
|
|
| T |
4594519 |
gatttatatgtccttgaagtggagctggaatcaacacagcatgtggttttctgtttgcaa |
4594578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 98 - 268
Target Start/End: Original strand, 4569429 - 4569595
Alignment:
| Q |
98 |
aaaccatttggaatggtctcaaagttaatgtcagtaaaaccatcaagagaatcaggacctcttgaattgagcaaggctttgtgattgtattcagtgttga |
197 |
Q |
| |
|
||||||| |||||| ||||||||| ||| ||||| |||||||||| | | ||||||||||| |||||||| ||||||||| || ||||||| |
|
|
| T |
4569429 |
aaaccatctggaatagtctcaaaggtaaaatcagtgaaaccatcaaaggcttttggacctcttgatttgagcaaatgtttgtgatt----tcggtgttga |
4569524 |
T |
|
| Q |
198 |
caaacgttatgtgaaagcctctaaggtgaagaagctttgctagtttcaacaatgcattgatatggccttga |
268 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||| |
|
|
| T |
4569525 |
caaaggttatgtgaaagcctctaaggtgaagaagttttgctagtttcaataatggattgatatggccttga |
4569595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 98 - 280
Target Start/End: Original strand, 4562017 - 4562199
Alignment:
| Q |
98 |
aaaccatttggaatggtctcaaagttaatgtcagtaaaaccatcaagagaatcaggacctcttgaattgagcaaggctttgtgattgtattcagtgttga |
197 |
Q |
| |
|
||||||| ||| || ||||||||||||| |||||| |||||||||| | || ||||||||| || ||||| ||||||||||||||||||||| | |
|
|
| T |
4562017 |
aaaccatctggtatagtctcaaagttaaagtcagtgaaaccatcaaaggcattttcacctcttgattt-agcaaacgtttgtgattgtattcagtgttaa |
4562115 |
T |
|
| Q |
198 |
caaacgtt-atgtgaaagcctctaaggtgaagaagctttgctagtttcaacaatgcattgatatggccttgagctggacatgga |
280 |
Q |
| |
|
|||| ||| |||||||||||||| |||||||| || ||||||| ||||||||||||||||||||| |||||| ||||| ||||| |
|
|
| T |
4562116 |
caaaggtttatgtgaaagcctcttaggtgaagcagttttgctattttcaacaatgcattgatatgaccttgaactggaaatgga |
4562199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 152 - 311
Target Start/End: Original strand, 4565438 - 4565597
Alignment:
| Q |
152 |
ggacctcttgaattgagcaaggctttgtgattgtattcagtgttgacaaacgttatgtgaaagcctctaaggtgaagaagctttgctagtttcaacaatg |
251 |
Q |
| |
|
||||||||||| || ||||| ||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
4565438 |
ggacctcttgattttagcaatcgtttatgattgtattcagtgttgacaaaggttatatgaaatcctctaaggtgaagaagttttgcaagtttgaacaatg |
4565537 |
T |
|
| Q |
252 |
cattgatatggccttgagctggacatggaatcaatacagcatgtggctttgtctttgcaa |
311 |
Q |
| |
|
||| ||||| |||||| |||| ||||||||| ||||||||||| ||| | ||||||| |
|
|
| T |
4565538 |
gatttatatgtccttgaaatggagctggaatcaacacagcatgtggttttctgtttgcaa |
4565597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 98 - 295
Target Start/End: Original strand, 4599518 - 4599715
Alignment:
| Q |
98 |
aaaccatttggaatggtctcaaagttaatgtcagtaaaaccatcaagagaatcaggacctcttgaattgagcaaggctttgtgattgtattcagtgttga |
197 |
Q |
| |
|
||||||| |||||| ||||| ||| || ||||| ||||||| | |||||| |||||||||||| ||||||||| |||||||||||| || ||||| | |
|
|
| T |
4599518 |
aaaccatctggaatagtctcgaaggaaaaatcagtgaaaccattacgagaattaggacctcttgatttgagcaagcgtttgtgattgtactcggtgttca |
4599617 |
T |
|
| Q |
198 |
caaacgttatgtgaaagcctctaaggtgaagaagctttgctagtttcaacaatgcattgatatggccttgagctggacatggaatcaatacagcatgt |
295 |
Q |
| |
|
| || ||||||| ||| |||||||||||||||| |||||||||||| | ||| |||||||| |||||| ||| ||||||||||||| |||||| |
|
|
| T |
4599618 |
cgaaggttatgtaaaatcctctaaggtgaagaatctttgctagtttgattaatagattgatatttccttgaattggtaatggaatcaatactgcatgt |
4599715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 98 - 221
Target Start/End: Complemental strand, 4503066 - 4502943
Alignment:
| Q |
98 |
aaaccatttggaatggtctcaaagttaatgtcagtaaaaccatcaagagaatcaggacctcttgaattgagcaaggctttgtgattgtattcagtgttga |
197 |
Q |
| |
|
||||||| ||| |||||||||||| ||| ||| | |||||||||| | || ||||||||||| ||||||||| ||||||||||||||| ||||||| |
|
|
| T |
4503066 |
aaaccatctggtatggtctcaaaggtaaaatcattgaaaccatcaaaggcatttggacctcttgatttgagcaagcgtttgtgattgtattcggtgttga |
4502967 |
T |
|
| Q |
198 |
caaacgttatgtgaaagcctctaa |
221 |
Q |
| |
|
|||| ||||||||||| ||||||| |
|
|
| T |
4502966 |
caaaggttatgtgaaatcctctaa |
4502943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 298
Target Start/End: Complemental strand, 4255481 - 4255394
Alignment:
| Q |
211 |
aaagcctctaaggtgaagaagctttgctagtttcaacaatgcattgatatggccttgagctggacatggaatcaatacagcatgtggc |
298 |
Q |
| |
|
||||||| |||| ||||| | ||||||||||| || ||| |||||||||||||||| ||||| |||||||||| |||||||||||| |
|
|
| T |
4255481 |
aaagcctttaagatgaagtaattttgctagtttgaataatagattgatatggccttgaactggatatggaatcaacacagcatgtggc |
4255394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 249 - 316
Target Start/End: Original strand, 4472612 - 4472679
Alignment:
| Q |
249 |
atgcattgatatggccttgagctggacatggaatcaatacagcatgtggctttgtctttgcaacatta |
316 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||| || |||||||| |||||| |||||| |||| |
|
|
| T |
4472612 |
atgcattgatatggccttggggtggacatggaatcaacactgcatgtggttttgtcattgcaaaatta |
4472679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 297
Target Start/End: Original strand, 4493401 - 4493459
Alignment:
| Q |
239 |
agtttcaacaatgcattgatatggccttgagctggacatggaatcaatacagcatgtgg |
297 |
Q |
| |
|
||||||| || |||||||||||| |||||||||||| |||||||||| || |||||||| |
|
|
| T |
4493401 |
agtttcagcattgcattgatatgaccttgagctggaaatggaatcaacactgcatgtgg |
4493459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 301
Target Start/End: Complemental strand, 4497899 - 4497815
Alignment:
| Q |
217 |
tctaaggtgaagaagctttgctagtttcaacaatgcattgatatggccttgagctggacatggaatcaatacagcatgtggcttt |
301 |
Q |
| |
|
|||||||||||| | ||| ||||||||||||||| |||||||||||||| | |||| ||||| | || || |||||||||||| |
|
|
| T |
4497899 |
tctaaggtgaagtaattttcctagtttcaacaatggattgatatggccttaaattggaaatggagttaacactgcatgtggcttt |
4497815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 4255528 - 4255479
Alignment:
| Q |
152 |
ggacctcttgaattgagcaaggctttgtgattgtattcagtgttgacaaa |
201 |
Q |
| |
|
||||||||||| | ||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
4255528 |
ggacctcttgattcgagcaagcgtttgtgattgtattcggtgttgacaaa |
4255479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 9e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 15 - 316
Target Start/End: Original strand, 24104364 - 24104668
Alignment:
| Q |
15 |
caaagggttgaaggaagtccgtcatgattgatcgaaaaaaggagtgtatgtcttgaataagatcaccact---ttccattacagtaaaaccatttggaat |
111 |
Q |
| |
|
||||||| |||||||||| ||||||||||||| | | || | || |||||||||| ||| ||||||| | ||||||| ||| | ||||| ||| || |
|
|
| T |
24104364 |
caaagggctgaaggaagttcgtcatgattgattgcacaagagggtatatgtcttgagtaacatcaccattgccttccattggagttagaccatctggtat |
24104463 |
T |
|
| Q |
112 |
ggtctcaaagttaatgtcagtaaaaccatcaagagaatcaggacctcttgaattgagcaaggctttgtgattgtattcagtgttgacaaacgttatgtga |
211 |
Q |
| |
|
|||||||||||||| |||| | |||||||||||||||| |||| ||||||| | ||||||| ||||||||||||||| ||||| || || ||||||||| |
|
|
| T |
24104464 |
ggtctcaaagttaaagtcattgaaaccatcaagagaattaggatctcttgattcgagcaagcgtttgtgattgtattcggtgttcacgaaggttatgtga |
24104563 |
T |
|
| Q |
212 |
aagcctctaaggtgaagaagctttgctagtttcaacaatgcattgatatggccttgagctggacatggaatcaatacagcatgtggctttgtctttgcaa |
311 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||| |||| ||||||||| |||||||| ||||||| |||| ||| |
|
|
| T |
24104564 |
aagcctctaaggtgaagaagctttcctagtttgaacaatgcattgatatgaccttgaaatggagctggaatcaacacagcatgcggctttggctttacaa |
24104663 |
T |
|
| Q |
312 |
catta |
316 |
Q |
| |
|
|||| |
|
|
| T |
24104664 |
aatta |
24104668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 134 - 311
Target Start/End: Original strand, 2215 - 2392
Alignment:
| Q |
134 |
aaaccatcaagagaatcaggacctcttgaattgagcaaggctttgtgattgtattcagtgttgacaaacgttatgtgaaagcctctaaggtgaagaagct |
233 |
Q |
| |
|
||||||||||||| || |||||||||||| ||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2215 |
aaaccatcaagagcattaggacctcttgatttgagcaagcgtttatgattgtattcagtgttgacaaaggttatgtgaaagcctctaaggtgaagaagct |
2314 |
T |
|
| Q |
234 |
ttgctagtttcaacaatgcattgatatggccttgagctggacatggaatcaatacagcatgtggctttgtctttgcaa |
311 |
Q |
| |
|
|||||||||| || |||| |||||||||||||||| ||||| |||||||||| ||||||||||| ||| | ||||||| |
|
|
| T |
2315 |
ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggttttttgtttgcaa |
2392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 134 - 311
Target Start/End: Complemental strand, 2188 - 2011
Alignment:
| Q |
134 |
aaaccatcaagagaatcaggacctcttgaattgagcaaggctttgtgattgtattcagtgttgacaaacgttatgtgaaagcctctaaggtgaagaagct |
233 |
Q |
| |
|
||||||||||||| || |||||||||||| ||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2188 |
aaaccatcaagagcattaggacctcttgatttgagcaagcgtttatgattgtattcagtgttgacaaaggttatgtgaaagcctctaaggtgaagaagct |
2089 |
T |
|
| Q |
234 |
ttgctagtttcaacaatgcattgatatggccttgagctggacatggaatcaatacagcatgtggctttgtctttgcaa |
311 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||| ||||| ||||||||| ||| ||||||| ||| | ||||||| |
|
|
| T |
2088 |
ttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtggttttctgtttgcaa |
2011 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 100 - 311
Target Start/End: Original strand, 1282790 - 1283001
Alignment:
| Q |
100 |
accatttggaatggtctcaaagttaatgtcagtaaaaccatcaagagaatcaggacctcttgaattgagcaaggctttgtgattgtattcagtgttgaca |
199 |
Q |
| |
|
||||| ||| ||||| |||||| ||| ||||| |||||||| || | || ||||||||||| ||||||||| |||||||||||||||||| || ||| |
|
|
| T |
1282790 |
accatctgggatggtttcaaagctaaaatcagtgaaaccatctagggcatttggacctcttgatttgagcaagcgtttgtgattgtattcagtattaaca |
1282889 |
T |
|
| Q |
200 |
aacgttatgtgaaagcctctaaggtgaagaagctttgctagtttcaacaatgcattgatatggccttgagctggacatggaatcaatacagcatgtggct |
299 |
Q |
| |
|
|| ||||||| |||||||||||||||||| || ||||||||||| ||||||| |||||||||||||||||||||| |||||||||| ||||||||||| | |
|
|
| T |
1282890 |
aaggttatgtaaaagcctctaaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcaacacagcatgtggtt |
1282989 |
T |
|
| Q |
300 |
ttgtctttgcaa |
311 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
1282990 |
ttgtgtttgcaa |
1283001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 128 - 301
Target Start/End: Original strand, 3088130 - 3088303
Alignment:
| Q |
128 |
tcagtaaaaccatcaagagaatcaggacctcttgaattgagcaaggctttgtgattgtattcagtgttgacaaacgttatgtgaaagcctctaaggtgaa |
227 |
Q |
| |
|
||||| |||||||||||||||| || ||||||||| || ||||| |||||||||||||| || |||||||| ||||||||||||||| ||||||||| |
|
|
| T |
3088130 |
tcagtgaaaccatcaagagaattagaacctcttgatttaagcaaacggttgtgattgtattcggtattgacaaaggttatgtgaaagcctttaaggtgaa |
3088229 |
T |
|
| Q |
228 |
gaagctttgctagtttcaacaatgcattgatatggccttgagctggacatggaatcaatacagcatgtggcttt |
301 |
Q |
| |
|
|||| ||||||||||| ||||||| ||| ||||| |||||| |||| |||||||||| ||||||||||||||| |
|
|
| T |
3088230 |
gaagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtggcttt |
3088303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 152 - 296
Target Start/End: Original strand, 1167 - 1311
Alignment:
| Q |
152 |
ggacctcttgaattgagcaaggctttgtgattgtattcagtgttgacaaacgttatgtgaaagcctctaaggtgaagaagctttgctagtttcaacaatg |
251 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||| | |||| ||| ||||||||||||||| ||| ||||||||||| ||||||| |
|
|
| T |
1167 |
ggacctcttgatttgagcaaacgtttgtgattgtattcagtgttgacataggttacatgagagcctctaaggtgaataagttttgctagtttgaacaatg |
1266 |
T |
|
| Q |
252 |
cattgatatggccttgagctggacatggaatcaatacagcatgtg |
296 |
Q |
| |
|
|||||||||||||||||||||| ||||||| || |||||||||| |
|
|
| T |
1267 |
gattgatatggccttgagctggatatggaatgaacacagcatgtg |
1311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 152 - 296
Target Start/End: Original strand, 1675930 - 1676074
Alignment:
| Q |
152 |
ggacctcttgaattgagcaaggctttgtgattgtattcagtgttgacaaacgttatgtgaaagcctctaaggtgaagaagctttgctagtttcaacaatg |
251 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||| | |||| ||| ||||||||||||||| ||| ||||||||||| ||||||| |
|
|
| T |
1675930 |
ggacctcttgatttgagcaaacgtttgtgattgtattcagtgttgacataggttacatgagagcctctaaggtgaataagttttgctagtttgaacaatg |
1676029 |
T |
|
| Q |
252 |
cattgatatggccttgagctggacatggaatcaatacagcatgtg |
296 |
Q |
| |
|
|||||||||||||||||||||| ||||||| || |||||||||| |
|
|
| T |
1676030 |
gattgatatggccttgagctggatatggaatgaacacagcatgtg |
1676074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 99 - 297
Target Start/End: Complemental strand, 20862582 - 20862384
Alignment:
| Q |
99 |
aaccatttggaatggtctcaaagttaatgtcagtaaaaccatcaa-gagaatcaggacctcttgaattgagcaaggctttgtgattgtattcagtgttga |
197 |
Q |
| |
|
|||||| ||||| |||||||||| || |||||| |||||||||| | | || ||||| |||| || |||||| |||||||||||||||||| |||| |
|
|
| T |
20862582 |
aaccatctggaacggtctcaaagcgaaagtcagtgaaaccatcaaagggtatt-ggacccattgacttaagcaagcgtttgtgattgtattcagtattga |
20862484 |
T |
|
| Q |
198 |
caaacgttatgtgaaagcctctaaggtgaagaagctttgctagtttcaacaatgcattgatatggccttgagctggacatggaatcaatacagcatgtgg |
297 |
Q |
| |
|
|||| ||||||| |||||||||||||||||| || ||||||||||| |||| || ||||||||| |||||| |||| ||||| | || || |||||||| |
|
|
| T |
20862483 |
caaatgttatgtaaaagcctctaaggtgaagtagttttgctagttttaacattggattgatatgaccttgaagtggatatggagttaacactgcatgtgg |
20862384 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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