View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17425_low_5 (Length: 290)
Name: NF17425_low_5
Description: NF17425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17425_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 9 - 275
Target Start/End: Original strand, 43381072 - 43381335
Alignment:
| Q |
9 |
aatttgtttcatagttaaacctgaaaaaatgaacatatttgtttatccttcttctttttcatacgttccttccaagctttaacaccannnnnnnnctttc |
108 |
Q |
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| T |
43381072 |
aatttgtttcatagttaaatctgaaaaaatgaacatatttttttatc-ttcttcttttccatatgttccttccaagttttaacaccattctttt--tttc |
43381168 |
T |
|
| Q |
109 |
tcttcaggttgttagagagcatattttaaatcaagatcatattttcaatcacgaagatatgatatagtaaaaatcaattagatgaaaatagtagtctcaa |
208 |
Q |
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||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43381169 |
tcttcaggttgttagggagcatattttaaatcacgatcatattttcaatcataaagatatgatatagtaaaaatcaattagatgaaaatcatagtctcaa |
43381268 |
T |
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| Q |
209 |
gtgttacatggtaagtggattcaaatattttannnnnnnagattattgacggtgtcgatgtgttagt |
275 |
Q |
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|||| ||| ||||||||||||||||||||||| ||||||||||| ||||| | |||||||| |
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| T |
43381269 |
gtgtaacaaggtaagtggattcaaatattttattttcttagattattgacagtgtcaacgtgttagt |
43381335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 9 - 275
Target Start/End: Original strand, 17471663 - 17471915
Alignment:
| Q |
9 |
aatttgtttcatagttaaacctgaaaaaatgaacatatttgtttatccttcttctttttcatacgttccttccaagctttaacaccannnnnnnnctttc |
108 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| ||| |||||||| |||||| ||||||||||||||| |||| |
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| T |
17471663 |
aatttgtttcatggttaaacctgaaaaaatgaacatattt-tttgtccttcttttttttc------------caagctttaacaccatttttttt-tttc |
17471748 |
T |
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| Q |
109 |
tcttcaggttgttagagagcatattttaaatcaagatcatattttcaatcacgaagatatgatatagtaaaaatcaattagatgaaaatagtagtctcaa |
208 |
Q |
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||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||| |
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| T |
17471749 |
tcttcaggttgttagggagcatattttaaatcacgatcatattttcaatcacgaagatatgatatagtgaaaatcaattagttgaaaatcatagtctcaa |
17471848 |
T |
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| Q |
209 |
gtgttacatggtaagtggattcaaatattttannnnnnnagattattgacggtgtcgatgtgttagt |
275 |
Q |
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|||| | | ||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
17471849 |
gtgtaataaggtaagtggattcaaatattttattttcttagattattgacggtgtcgacgtgttagt |
17471915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 9 - 275
Target Start/End: Complemental strand, 17581551 - 17581299
Alignment:
| Q |
9 |
aatttgtttcatagttaaacctgaaaaaatgaacatatttgtttatccttcttctttttcatacgttccttccaagctttaacaccannnnnnnnctttc |
108 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| ||| |||||||| |||||| ||||||||||||||| |||| |
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| T |
17581551 |
aatttgtttcatggttaaacctgaaaaaatgaacatattt-tttgtccttcttttttttc------------caagctttaacaccatttttttt-tttc |
17581466 |
T |
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| Q |
109 |
tcttcaggttgttagagagcatattttaaatcaagatcatattttcaatcacgaagatatgatatagtaaaaatcaattagatgaaaatagtagtctcaa |
208 |
Q |
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||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||| |
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| T |
17581465 |
tcttcaggttgttagggagcatattttaaatcacgatcatattttcaatcacgaagatatgatatagtgaaaatcaattagttgaaaatcatagtctcaa |
17581366 |
T |
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| Q |
209 |
gtgttacatggtaagtggattcaaatattttannnnnnnagattattgacggtgtcgatgtgttagt |
275 |
Q |
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|||| | | ||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
17581365 |
gtgtaataaggtaagtggattcaaatattttattttcttagattattgacggtgtcgacgtgttagt |
17581299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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