View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17425_low_6 (Length: 254)
Name: NF17425_low_6
Description: NF17425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17425_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 35 - 248
Target Start/End: Complemental strand, 26880530 - 26880318
Alignment:
| Q |
35 |
atgagttctccaatcacctttcactgccaatggcttcccacattttcgacaagtaaacgtcttcgaaccatgcttcctcttgtagtgtgtgtgtctgcag |
134 |
Q |
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| T |
26880530 |
atgagttctccaatcacctttcactgccaatggcttcccacattttcgacaagtaaacgtcttcgaaccatgcttcctcttgtagtgtgtgtgtctgcag |
26880431 |
T |
|
| Q |
135 |
tgttctgcaatccttcaatggcttagctcttggatgctcaatgttgttcttacatccctttgaacaacaatagcatggtaggtctaacaatggtcgtgga |
234 |
Q |
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| T |
26880430 |
tgttctgaaatccttcaatggcttagctcttggatgctcaatgttgttc-tacatccctttgagcaacaatagcatggtaggtctaacaatggtcgtgga |
26880332 |
T |
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| Q |
235 |
tgagttcatttcag |
248 |
Q |
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|| |||| |||||| |
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| T |
26880331 |
tgggttcttttcag |
26880318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 209
Target Start/End: Original strand, 22295896 - 22296080
Alignment:
| Q |
21 |
ccacagtttttctcatgagttctccaatcacctttcactgccaatggcttcccacattttcgacaagtaaacgtcttcgaaccatgcttcctcttgtagt |
120 |
Q |
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| T |
22295896 |
ccacagtttttctcatgtgttctccagtcacctctaactgcaaatggtttcccacactttctacacccaaatggctttgctccatgcttcctcttgtagt |
22295995 |
T |
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| Q |
121 |
gtgtgtgtctgcagtgttctgcaatccttcaatggcttagctcttggatgctcaatgttgttcttacatccctttgaacaacaatagca |
209 |
Q |
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| T |
22295996 |
gtgtttga----agtgttctgaaatccttgagtggccttgaccttggatgctctatgttgttcttgcatccctctgcacagcaatagca |
22296080 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 39300613 - 39300388
Alignment:
| Q |
19 |
tgccacagtttttctcatgagttctccaatcacctttcactgccaatggcttcccacattttcgacaagtaaacgtcttcgaaccatgcttcctcttgta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || |||||||||||||||||||| |
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| T |
39300613 |
tgccacagtttttctcatgagttctccaatcacctttcactgccaatggcttcccacattttcgacaagtgaatgtttttgaaccatgcttcctcttgta |
39300514 |
T |
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| Q |
119 |
gtgtgtgtgtctgcagtgttctgcaatccttcaatggcttagctcttggatgctcaatgttgttcttacatccctttgaacaacaatagcatggtaggtc |
218 |
Q |
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| T |
39300513 |
gtgtgt----ctgcagtgttctgaaatccttcaatggcttagctcttggatgctcaatgttgttcttacatccctttgaacaacaatagcatggtaggtc |
39300418 |
T |
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| Q |
219 |
taacaatggtcgtggatgagttcatttcag |
248 |
Q |
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| T |
39300417 |
taacaatggtcgtggatgggttcttttcag |
39300388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 209
Target Start/End: Original strand, 21035766 - 21035851
Alignment:
| Q |
124 |
tgtgtctgcagtgttctgcaatccttcaatggcttagctcttggatgctcaatgttgttcttacatccctttgaacaacaatagca |
209 |
Q |
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| T |
21035766 |
tgtgtttgaagtgttctgaaatctttcaatggctttgctcttgggtgatcaatgttgttcctgcaacctggtgaacaacaatagca |
21035851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 13516753 - 13516813
Alignment:
| Q |
21 |
ccacagtttttctcatgagttctccaatcacctttcactgccaatggcttcccacattttc |
81 |
Q |
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| T |
13516753 |
ccacaattcttctcatgtgttctccaatcacctttcactgcaaatgatttgccacattttc |
13516813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 13606286 - 13606346
Alignment:
| Q |
21 |
ccacagtttttctcatgagttctccaatcacctttcactgccaatggcttcccacattttc |
81 |
Q |
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| T |
13606286 |
ccacaattcttctcatgtgttctccaatcacctttcactgcaaatgatttgccacattttc |
13606346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 36259877 - 36259911
Alignment:
| Q |
21 |
ccacagtttttctcatgagttctccaatcaccttt |
55 |
Q |
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| T |
36259877 |
ccacagtttttttcatgagttctccaatcaccttt |
36259911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 212
Target Start/End: Complemental strand, 41939602 - 41939415
Alignment:
| Q |
21 |
ccacagtttttctcatgagttctccaatcacctttcactgccaatggcttcccacattttcgacaagtaaacgtcttcgaaccatgcttcctcttgtagt |
120 |
Q |
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|||||||||||||| ||||||||||| |||||| | ||||| |||| || | ||| |||| ||| |||| | ||| |||||||| |||||||| | |
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| T |
41939602 |
ccacagtttttctcgtgagttctccagtcacctcttactgcaaatgctttgcaacactttctacacataaatggctttattccatgctttctcttgtaat |
41939503 |
T |
|
| Q |
121 |
gtgtgtgtctgcagtgttctgcaatccttcaatggcttagctcttggatgctcaatgttgttcttacatccctttgaacaacaatagcatgg |
212 |
Q |
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| T |
41939502 |
gtgtttga----agtgttctaaaatctttcagtggttttgctcttggatgatcaatgttgttcttgcatccaggtgcacaacaataacatgg |
41939415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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