View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17425_low_8 (Length: 237)

Name: NF17425_low_8
Description: NF17425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17425_low_8
NF17425_low_8
[»] chr7 (10 HSPs)
chr7 (1-221)||(7310833-7311052)
chr7 (1-221)||(7306283-7306500)
chr7 (1-221)||(7328406-7328620)
chr7 (7-86)||(35205658-35205737)
chr7 (1-85)||(21218469-21218553)
chr7 (132-183)||(21218375-21218426)
chr7 (3-73)||(20415100-20415170)
chr7 (35-81)||(19645454-19645500)
chr7 (132-195)||(35205534-35205601)
chr7 (25-73)||(20456745-20456793)
[»] chr1 (1 HSPs)
chr1 (1-86)||(31442749-31442834)
[»] chr5 (1 HSPs)
chr5 (7-85)||(42298342-42298420)
[»] scaffold0128 (1 HSPs)
scaffold0128 (9-85)||(4370-4446)
[»] chr2 (2 HSPs)
chr2 (39-85)||(18908534-18908580)
chr2 (36-80)||(20967936-20967980)
[»] scaffold0064 (1 HSPs)
scaffold0064 (1-86)||(24406-24491)
[»] chr4 (1 HSPs)
chr4 (17-90)||(2911310-2911383)


Alignment Details
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 7311052 - 7310833
Alignment:
Q  1 ctagagttaacaaaaagatatgttggttctctatcaaggattatgtcgaaagtctggtttcaacctattgaaagtaagtttttctccaacataatattta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  7311052 ctagagttaacaaaaagatatgttggttctctatcaaggattatgtcgaaagtctggtttcaacctattgaaagtaagtttttttctaacataatattta 7310953  T
Q  101 tttcaatttatgtacttggnnnnnnnnactaggtttcgattgtgtgattatttcctttactttaaaactttgtcgtagatatggtaaatcaaccgaagga 200  Q
    ||||| ||||||||||||         |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  7310952 tttcagtttatgtacttgtttttttttactaggtttcgattgtatgattatttcctttactttaaaactttgtcgtag-tatggtgaatcaaccgaagga 7310854  T
Q  201 tccgaatacatgtttagaact 221  Q
    ||||||||| |||||||||||    
T  7310853 tccgaatacctgtttagaact 7310833  T

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Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 7306500 - 7306283
Alignment:
Q  1 ctagagttaacaaaaagatatgttggttctctatcaaggattatgtcgaaagtctggtttcaacctattgaaagtaagtttttctccaacataatattta 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||    
T  7306500 ctagagtcaacaaaaagatatgttggttctctatcaaggattatgtcgaaagtctggtctcaacctattgaacgtaggtttttctccaacataatattta 7306401  T
Q  101 tttcaatttatgtacttggnnnnnnnnactaggtttcgattgtgtgattatttcctttactttaaaactttgtcgtagatatggtaaatcaaccgaagga 200  Q
    |||||||||||||||||||        ||| |||||| |||||| ||||||||||||||||||||||||||| | |||||||||| |||||| | | |||    
T  7306400 tttcaatttatgtacttgg---tttttacttggtttcaattgtgcgattatttcctttactttaaaactttgccatagatatggtgaatcaatcaacgga 7306304  T
Q  201 tccgaatacatgtttagaact 221  Q
    ||||||||| | |||||||||    
T  7306303 tccgaatacctttttagaact 7306283  T

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Target: chr7; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 7328406 - 7328620
Alignment:
Q  1 ctagagttaacaaaaagatatgttggttctctatcaaggattatgtcgaaagtctggtttcaacctattgaaagtaagtttttctccaacataatattta 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  7328406 ctagagttaacaaaaagatatgttggtactctatcaaggattatgtcgaaagtctggtttcaacctgctgaaagtaagtttttctccaacataatattta 7328505  T
Q  101 tttcaatttatgtacttggnnnnnnnnactaggtttcgattgtgtgattatttcctttactttaaaactttgtcgtagatatggtaaatcaaccgaagga 200  Q
    ||||||||||||||||| |         ||  ||||    ||||||| ||||| |||||||||| ||||||||| |||||||||| ||||||||||  ||    
T  7328506 tttcaatttatgtacttagttttgc---cttcgttt---atgtgtgagtatttgctttactttagaactttgtcatagatatggtgaatcaaccgactga 7328599  T
Q  201 tccgaatacatgtttagaact 221  Q
    ||||||||| |||| ||||||    
T  7328600 tccgaatacgtgttcagaact 7328620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 35205737 - 35205658
Alignment:
Q  7 ttaacaaaaagatatgttggttctctatcaaggattatgtcgaaagtctggtttcaacctattgaaagtaagtttttctc 86  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||   ||||| ||||||| |||||    
T  35205737 ttaacaataagatatgttggttcactatcaaggattatgtcgaaagcctggtttcaactagttgaatgtaagttgttctc 35205658  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 21218553 - 21218469
Alignment:
Q  1 ctagagttaacaaaaagatatgttggttctctatcaaggattatgtcgaaagtctggtttcaacctattgaaagtaagtttttct 85  Q
    ||||| |||||||||||||| |||||| |||  || | ||||||||||||||  |||||||||| | ||||||||||||| ||||    
T  21218553 ctagaattaacaaaaagataagttggtcctcagtctatgattatgtcgaaagcttggtttcaacttcttgaaagtaagttcttct 21218469  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 21218426 - 21218375
Alignment:
Q  132 ggtttcgattgtgtgattatttcctttactttaaaactttgtcgtagatatg 183  Q
    |||||| |||||||||||||||||||| ||| ||||||||||| ||||||||    
T  21218426 ggtttcaattgtgtgattatttcctttgcttcaaaactttgtcatagatatg 21218375  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 20415100 - 20415170
Alignment:
Q  3 agagttaacaaaaagatatgttggttctctatcaaggattatgtcgaaagtctggtttcaacctattgaaa 73  Q
    ||||||||||| || | ||||||||||||||||||   |||||| ||||||||||||||||| | ||||||    
T  20415100 agagttaacaataacaaatgttggttctctatcaactgttatgttgaaagtctggtttcaacttgttgaaa 20415170  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 19645500 - 19645454
Alignment:
Q  35 caaggattatgtcgaaagtctggtttcaacctattgaaagtaagttt 81  Q
    |||||||||||| |||||| |||||||||| | ||||||||||||||    
T  19645500 caaggattatgttgaaagtttggtttcaacttgttgaaagtaagttt 19645454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 195
Target Start/End: Complemental strand, 35205601 - 35205534
Alignment:
Q  132 ggtttcgattgtgtgattatttcct----ttactttaaaactttgtcgtagatatggtaaatcaaccg 195  Q
    ||||||||||||||| | |||||||    |||||| ||||||||||| |||||||| |||||||||||    
T  35205601 ggtttcgattgtgtggtcatttcctggctttacttcaaaactttgtcatagatatgctaaatcaaccg 35205534  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 20456745 - 20456793
Alignment:
Q  25 ggttctctatcaaggattatgtcgaaagtctggtttcaacctattgaaa 73  Q
    ||||||||||||||| |||||| |||||| |||||||||| | ||||||    
T  20456745 ggttctctatcaagggttatgttgaaagtttggtttcaacttgttgaaa 20456793  T

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Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 31442834 - 31442749
Alignment:
Q  1 ctagagttaacaaaaagatatgttggttctctatcaaggattatgtcgaaagtctggtttcaacctattgaaagtaagtttttctc 86  Q
    |||||||||||||||||||||||||||||||||| ||  |||||||||||||  ||||||||||   ||||||||||||| |||||    
T  31442834 ctagagttaacaaaaagatatgttggttctctataaaccattatgtcgaaagcttggtttcaacaagttgaaagtaagttcttctc 31442749  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 42298342 - 42298420
Alignment:
Q  7 ttaacaaaaagatatgttggttctctatcaaggattatgtcgaaagtctggtttcaacctattgaaagtaagtttttct 85  Q
    |||||| |||||||||||||| ||| || || ||||||||||||||  |||||||||| | ||||||||||||| ||||    
T  42298342 ttaacagaaagatatgttggtcctcaatgaaagattatgtcgaaagcttggtttcaacttcttgaaagtaagttcttct 42298420  T

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Target: scaffold0128 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 4370 - 4446
Alignment:
Q  9 aacaaaaagatatgttggttctctatcaaggattatgtcgaaagtctggtttcaacctattgaaagtaagtttttct 85  Q
    |||||||||||| |||||||| | || || ||||||||||||||  |||||||||| | ||||||||||||| ||||    
T  4370 aacaaaaagatacgttggttcccaatgaaagattatgtcgaaagcttggtttcaacttcttgaaagtaagttcttct 4446  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 18908580 - 18908534
Alignment:
Q  39 gattatgtcgaaagtctggtttcaacctattgaaagtaagtttttct 85  Q
    |||||||| |||||  |||||||||||| ||||||||||||||||||    
T  18908580 gattatgttgaaagcttggtttcaacctcttgaaagtaagtttttct 18908534  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 20967936 - 20967980
Alignment:
Q  36 aaggattatgtcgaaagtctggtttcaacctattgaaagtaagtt 80  Q
    ||||||||| |||||||| |||||||||| | |||||||||||||    
T  20967936 aaggattatatcgaaagtttggtttcaacttgttgaaagtaagtt 20967980  T

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Target: scaffold0064 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 24406 - 24491
Alignment:
Q  1 ctagagttaacaaaaagatatgttggttctctatcaaggattatgtcgaaagtctggtttcaacctattgaaagtaagtttttctc 86  Q
    |||| ||||||||||||||||||||||  ||||| ||  ||||||| |||||  ||||| |||| | |||| |||||||| |||||    
T  24406 ctagggttaacaaaaagatatgttggtgatctataaacaattatgttgaaagcatggttccaacttgttgagagtaagttcttctc 24491  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 2911310 - 2911383
Alignment:
Q  17 gatatgttggttctctatcaaggattatgtcgaaagtctggtttcaacctattgaaagtaagtttttctccaac 90  Q
    |||| ||||||| ||||| || |||||||| |||||  |||| ||||| | ||||||||||||| |||||||||    
T  2911310 gatacgttggttttctatgaacgattatgtagaaagcttggtatcaacttcttgaaagtaagttcttctccaac 2911383  T

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