View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17426_high_1 (Length: 669)

Name: NF17426_high_1
Description: NF17426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17426_high_1
NF17426_high_1
[»] chr2 (2 HSPs)
chr2 (8-564)||(44692796-44693353)
chr2 (558-651)||(44692665-44692758)
[»] chr4 (3 HSPs)
chr4 (240-539)||(34866072-34866371)
chr4 (558-651)||(34866434-34866527)
chr4 (255-319)||(28890608-28890672)


Alignment Details
Target: chr2 (Bit Score: 522; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 8 - 564
Target Start/End: Complemental strand, 44693353 - 44692796
Alignment:
Q  8 cagcacagaacatccagcaccactgagacggaatcaaccccgaaaaccagacaaccagcgaaggaaaaccagacagaaaacgataccttcagcagacaaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  44693353 cagcacagaacatccagcaccactgagacggaatcaaccccgaaaaccagacaactagcgaaggaaaaccagacagaaaacgataccttcagcagacaaa 44693254  T
Q  108 ccaaacagcacaaaaacaactatctcaatagacacaacttcggattccaacttcactcataataaaggcaggccggtatattaaggcgggataggcacca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  44693253 ccaaacagcacaaaaacaactatctcaatagacacaacttcggattccaacttcactcataataaaggcaggccggtatcttaaggctggataggcacca 44693154  T
Q  208 cctccacgataaaactttaacctc-tcaatgatttccaacacttccttcaccttgtcattaaatatcttatcatttctcgctttccaaatcacccaaatt 306  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44693153 cctccacgataaaactttaacctcctcaacgatttccaacacttccttcaccttgtcattaaatatcttatcatttctcgctttccaaatcacccaaatt 44693054  T
Q  307 gtcgcgtgccaaatgagtctaaatcccttaatcatcttcttattagaggctcccgcattccaacagaaccaatgattaaaaacactttgcggcattataa 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  44693053 gtcgcgtgccaaatgagtctaaatcccttaatcatcttcttattagaggctcccgcattccaacagagccaatgattaaaaacactttgcggcattataa 44692954  T
Q  407 acatactatcaacccacttgagaagctccaaccaaatccctctagccaccggacaatgcacaaaaaggtgattagatctttccatttcctcctcgcacaa 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  44692953 acatactatcaacccacttgagaagctccaaccaaatccctctagccaccggacaatgcacaaaaaggtgattagatatttccatttcctcctcgcacaa 44692854  T
Q  507 cacacatctaaccgaaacctccggggggagggcattcctcctacgaagattccaccgc 564  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  44692853 cacacatctaaccgaaacctccggggggagggcattccttctacgaagattccaccgc 44692796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 558 - 651
Target Start/End: Complemental strand, 44692758 - 44692665
Alignment:
Q  558 ccaccgcttttgacggagccgggcttttccaaagttgagaaaaaactcccaactcctccacactccacctattctccacaatccagctaccttc 651  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44692758 ccaccacttttgacggagccgggcttttccaaagttgagaaaaaactcccaactcctccacactccacctattctccacaatccagctaccttc 44692665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 7e-54; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 240 - 539
Target Start/End: Original strand, 34866072 - 34866371
Alignment:
Q  240 ttccaacacttccttcaccttgtcattaaatatcttatcatttctcgctttccaaatcacccaaattgtcgcgtgccaaatgagtctaaatcccttaatc 339  Q
    ||||| ||| || ||| ||||||| ||||| ||||||||||| |||   |||||||| ||||||||||  || ||||||||||||||||| |||||||||    
T  34866072 ttccatcacctctttctccttgtcgttaaaaatcttatcattcctcatcttccaaataacccaaattgcggcatgccaaatgagtctaaaacccttaatc 34866171  T
Q  340 atcttcttattagaggctcccgcattccaacagaaccaatgattaaaaacactttgcggcattataaacatactatcaacccacttgagaagctccaacc 439  Q
    |  |||||||||||||| |||||||||||||| |||||||||||||||||| |||| ||||| | ||||||| ||||||||||||| || || || ||||    
T  34866172 aatttcttattagaggcacccgcattccaacacaaccaatgattaaaaacattttgaggcatcaaaaacatattatcaacccacttaaggagttctaacc 34866271  T
Q  440 aaatccctctagccaccggacaatgcacaaaaaggtgattagatctttccatttcctcctcgcacaacacacatctaaccgaaacctccggggggagggc 539  Q
    |||||||||||||||||  ||||||| | || |||||| | ||| ||||| | ||  ||||||| ||  |||| || ||||| |||||||| || |||||    
T  34866272 aaatccctctagccaccatacaatgcgcgaagaggtgaatggatgtttccgtctcaacctcgcataaagcacacctcaccgagacctccggaggaagggc 34866371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 558 - 651
Target Start/End: Original strand, 34866434 - 34866527
Alignment:
Q  558 ccaccgcttttgacggagccgggcttttccaaagttgagaaaaaactcccaactcctccacactccacctattctccacaatccagctaccttc 651  Q
    ||||| ||||||| || ||||||||||||||||||||   ||| |||| ||||||||||||||||||  | |||||||||||||| || |||||    
T  34866434 ccaccacttttgagggggccgggcttttccaaagttggagaaacactctcaactcctccacactccaattgttctccacaatccatctcccttc 34866527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 255 - 319
Target Start/End: Original strand, 28890608 - 28890672
Alignment:
Q  255 caccttgtcattaaatatcttatcatttctcgctttccaaatcacccaaattgtcgcgtgccaaa 319  Q
    ||||||||||||||| || | | |||||||   |||||||| |||||||||||| ||||||||||    
T  28890608 caccttgtcattaaaaatttgaccatttctatatttccaaagcacccaaattgttgcgtgccaaa 28890672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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