View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17426_low_12 (Length: 204)
Name: NF17426_low_12
Description: NF17426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17426_low_12 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 33051128 - 33050925
Alignment:
| Q |
1 |
agtggtgcatgactatctctatgactcatcacagcccataaaatacatttcaaagtaacatgtaattgagaaaaaatctgagaaaaaactataggacaat |
100 |
Q |
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| T |
33051128 |
agtggtgcatgactatctctatgactcatcacagcccataaaatacatttcaaagtaacatgtaattgagaaaaaatctgagaaaaaactataggacaat |
33051029 |
T |
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| Q |
101 |
gcaacattgatacaccgtacataacacacaagtttgaaccaacaatgataaatttgaaacataaagacactaaattaaatccaacttggatatacctaag |
200 |
Q |
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| T |
33051028 |
gcaacattgatacaccgtacataacacacaagtttgaaccaacaatgataaatttgaaacataaagacactaaattaaatccaacttggatatacctaag |
33050929 |
T |
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| Q |
201 |
aaac |
204 |
Q |
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|||| |
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| T |
33050928 |
aaac |
33050925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 33032886 - 33032816
Alignment:
| Q |
1 |
agtggtgcatgactatctctatgactcatcacagcccataaaatac--atttcaaagtaacatgtaattga |
69 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||| | |||| ||||| |||||||||| |
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| T |
33032886 |
agtggtgcatgactatctctatgactcatcatagccaataaaatacaaaattcagagtaatatgtaattga |
33032816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 8264079 - 8264038
Alignment:
| Q |
1 |
agtggtgcatgactatctctatgactcatcacagcccataaa |
42 |
Q |
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| T |
8264079 |
agtggtgcatgactatctctatgattcatcatagcccataaa |
8264038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 8277497 - 8277456
Alignment:
| Q |
1 |
agtggtgcatgactatctctatgactcatcacagcccataaa |
42 |
Q |
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|||||||||||||||||||||||| |||||| |||||||||| |
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| T |
8277497 |
agtggtgcatgactatctctatgattcatcatagcccataaa |
8277456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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