View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17426_low_2 (Length: 648)
Name: NF17426_low_2
Description: NF17426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17426_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 522; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 8 - 564
Target Start/End: Complemental strand, 44693353 - 44692796
Alignment:
| Q |
8 |
cagcacagaacatccagcaccactgagacggaatcaaccccgaaaaccagacaaccagcgaaggaaaaccagacagaaaacgataccttcagcagacaaa |
107 |
Q |
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| T |
44693353 |
cagcacagaacatccagcaccactgagacggaatcaaccccgaaaaccagacaactagcgaaggaaaaccagacagaaaacgataccttcagcagacaaa |
44693254 |
T |
|
| Q |
108 |
ccaaacagcacaaaaacaactatctcaatagacacaacttcggattccaacttcactcataataaaggcaggccggtatattaaggcgggataggcacca |
207 |
Q |
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| T |
44693253 |
ccaaacagcacaaaaacaactatctcaatagacacaacttcggattccaacttcactcataataaaggcaggccggtatcttaaggctggataggcacca |
44693154 |
T |
|
| Q |
208 |
cctccacgataaaactttaacctc-tcaatgatttccaacacttccttcaccttgtcattaaatatcttatcatttctcgctttccaaatcacccaaatt |
306 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44693153 |
cctccacgataaaactttaacctcctcaacgatttccaacacttccttcaccttgtcattaaatatcttatcatttctcgctttccaaatcacccaaatt |
44693054 |
T |
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| Q |
307 |
gtcgcgtgccaaatgagtctaaatcccttaatcatcttcttattagaggctcccgcattccaacagaaccaatgattaaaaacactttgcggcattataa |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44693053 |
gtcgcgtgccaaatgagtctaaatcccttaatcatcttcttattagaggctcccgcattccaacagagccaatgattaaaaacactttgcggcattataa |
44692954 |
T |
|
| Q |
407 |
acatactatcaacccacttgagaagctccaaccaaatccctctagccaccggacaatgcacaaaaaggtgattagatctttccatttcctcctcgcacaa |
506 |
Q |
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| T |
44692953 |
acatactatcaacccacttgagaagctccaaccaaatccctctagccaccggacaatgcacaaaaaggtgattagatatttccatttcctcctcgcacaa |
44692854 |
T |
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| Q |
507 |
cacacatctaaccgaaacctccggggggagggcattcctcctacgaagattccaccgc |
564 |
Q |
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| T |
44692853 |
cacacatctaaccgaaacctccggggggagggcattccttctacgaagattccaccgc |
44692796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 558 - 630
Target Start/End: Complemental strand, 44692758 - 44692686
Alignment:
| Q |
558 |
ccaccgcttttgacggagccgggcttttccaaagttgagaaaaaactcccaactcctccacactccacctatt |
630 |
Q |
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| T |
44692758 |
ccaccacttttgacggagccgggcttttccaaagttgagaaaaaactcccaactcctccacactccacctatt |
44692686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 7e-54; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 240 - 539
Target Start/End: Original strand, 34866072 - 34866371
Alignment:
| Q |
240 |
ttccaacacttccttcaccttgtcattaaatatcttatcatttctcgctttccaaatcacccaaattgtcgcgtgccaaatgagtctaaatcccttaatc |
339 |
Q |
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| T |
34866072 |
ttccatcacctctttctccttgtcgttaaaaatcttatcattcctcatcttccaaataacccaaattgcggcatgccaaatgagtctaaaacccttaatc |
34866171 |
T |
|
| Q |
340 |
atcttcttattagaggctcccgcattccaacagaaccaatgattaaaaacactttgcggcattataaacatactatcaacccacttgagaagctccaacc |
439 |
Q |
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| |||||||||||||| |||||||||||||| |||||||||||||||||| |||| ||||| | ||||||| ||||||||||||| || || || |||| |
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| T |
34866172 |
aatttcttattagaggcacccgcattccaacacaaccaatgattaaaaacattttgaggcatcaaaaacatattatcaacccacttaaggagttctaacc |
34866271 |
T |
|
| Q |
440 |
aaatccctctagccaccggacaatgcacaaaaaggtgattagatctttccatttcctcctcgcacaacacacatctaaccgaaacctccggggggagggc |
539 |
Q |
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||||||||||||||||| ||||||| | || |||||| | ||| ||||| | || ||||||| || |||| || ||||| |||||||| || ||||| |
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| T |
34866272 |
aaatccctctagccaccatacaatgcgcgaagaggtgaatggatgtttccgtctcaacctcgcataaagcacacctcaccgagacctccggaggaagggc |
34866371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 558 - 624
Target Start/End: Original strand, 34866434 - 34866500
Alignment:
| Q |
558 |
ccaccgcttttgacggagccgggcttttccaaagttgagaaaaaactcccaactcctccacactcca |
624 |
Q |
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||||| ||||||| || |||||||||||||||||||| ||| |||| |||||||||||||||||| |
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| T |
34866434 |
ccaccacttttgagggggccgggcttttccaaagttggagaaacactctcaactcctccacactcca |
34866500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 255 - 319
Target Start/End: Original strand, 28890608 - 28890672
Alignment:
| Q |
255 |
caccttgtcattaaatatcttatcatttctcgctttccaaatcacccaaattgtcgcgtgccaaa |
319 |
Q |
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| T |
28890608 |
caccttgtcattaaaaatttgaccatttctatatttccaaagcacccaaattgttgcgtgccaaa |
28890672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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