View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17426_low_3 (Length: 506)
Name: NF17426_low_3
Description: NF17426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17426_low_3 |
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| [»] scaffold0219 (3 HSPs) |
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Alignment Details
Target: scaffold0219 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 14 - 484
Target Start/End: Complemental strand, 25177 - 24708
Alignment:
| Q |
14 |
catagggttcaaattgtgtccaatttaggagggcttcagatcaactacactccctctaatgcaactcttaagaataggggtcatgatatcaaggttagtt |
113 |
Q |
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| T |
25177 |
catagggttcaaattgtgtccaatttaggaggacttcagatcaactacactccctctaatgcaactcttaaaaataggggtcatgatatcaaggttagtt |
25078 |
T |
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| Q |
114 |
tatnnnnnnntatcttattataaagaagttattgannnnnnncttcttcttcttctattttatgtgatgcaaatttctttgaattaatttgtttatgaat |
213 |
Q |
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| T |
25077 |
tataaaaaaatatcttattatgaagaagttattgatttttg---ttttcttcttctattttatgtgatgcaaatttatttgaattaatttgtttatgaat |
24981 |
T |
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| Q |
214 |
agctggaattgattgcaaactcaagctatctacaaattaatggaactcagtatgtacttaaacagttacattggcattctccctctgaacacaccataga |
313 |
Q |
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| T |
24980 |
agctggaattgattgcaaactcaagctatctacaaattaatggaactcagtatgtacttaaacagttacattggcattctccctctgaacacaccataga |
24881 |
T |
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| Q |
314 |
tggcaaaaggtacatactttacaacatggaaaatatcacaaaagttctacttgaaccactatccaaatcatgata--ttatcnnnnnnnnnatgaatgat |
411 |
Q |
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| T |
24880 |
tggcaaaaggtacatactttacaacatggaaaatatcacaaaagttctactcgaaccactatccaaatcatgatatttttttattttttttacgaatgat |
24781 |
T |
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| Q |
412 |
gttctatctattgaataaacggtaaaatcactcaaactcacacacacaactgtaagatattagatgtaacctg |
484 |
Q |
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| T |
24780 |
gttctatctattgaataaacgataaaatcactcaaactcacacacacaacggtaagatattaggtgtaacctg |
24708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0219; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 207 - 332
Target Start/End: Complemental strand, 13722 - 13597
Alignment:
| Q |
207 |
tatgaatagctggaattgattgcaaactcaagctatctacaaattaatggaactcagtatgtacttaaacagttacattggcattctccctctgaacaca |
306 |
Q |
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| T |
13722 |
tatgaataggttgaattgatgtcgaactcaagctatctacaaattgatggaacacagtatgaacttctacagttccattggcatactccatctgaacaca |
13623 |
T |
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| Q |
307 |
ccatagatggcaaaaggtacatactt |
332 |
Q |
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| T |
13622 |
ccatcaatggtgtaaggtacatactt |
13597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0219; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 47 - 113
Target Start/End: Complemental strand, 13877 - 13811
Alignment:
| Q |
47 |
cttcagatcaactacactccctctaatgcaactcttaagaataggggtcatgatatcaaggttagtt |
113 |
Q |
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| T |
13877 |
cttcagaccaactacaatccctctaatgcaactcttaaaaacaggggtcatgatgtcaaggtaagtt |
13811 |
T |
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Back To:
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