View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17426_low_4 (Length: 347)

Name: NF17426_low_4
Description: NF17426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17426_low_4
NF17426_low_4
[»] chr1 (12 HSPs)
chr1 (1-332)||(32253438-32253769)
chr1 (99-330)||(32243012-32243243)
chr1 (99-330)||(32248750-32248981)
chr1 (1-94)||(32242866-32242959)
chr1 (1-94)||(32248604-32248697)
chr1 (32-94)||(32242813-32242875)
chr1 (32-94)||(32253385-32253447)
chr1 (5-94)||(32253400-32253489)
chr1 (5-94)||(32242828-32242917)
chr1 (5-65)||(32242912-32242972)
chr1 (5-65)||(32248650-32248710)
chr1 (17-94)||(32248578-32248655)


Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 32253438 - 32253769
Alignment:
Q  1 ctggctatgtccgggatgtcttggatcccattctctttcttcctgactatgtccgggatgtcttgggtctcgctctctttcttcttgactatgttctcgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32253438 ctggctatgtccgggatgtcttggatcccattctctttcttcctgactatgtccgggatgtcttgggtcccgctctctttcttcttgactatgttctcgt 32253537  T
Q  101 ctaagaaggtgtcttgatctcccttcatcttcttcctcctcgggacttctttcatattcttcatcttcttgctgccactcaggactgatgatgctgagac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32253538 ctaagaaggtgtcttgatctcccttcatcttcttcctcctcgggacttctttcatattcttcatcttcttgctgccactcaggactgatgatgctgagac 32253637  T
Q  201 cgccctctactctcacgatttggctcctctggtcgcgtggggattgtagtctcttagctgtatcctgatccgtgttgagagcctgcgctaaaaactctga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32253638 cgccctctactctcacgatttggctcctctggtcgcgtggggattgtagtctcttagctgtatcctgatccgtgttgagagcctgcgctaaaaactctga 32253737  T
Q  301 gctgaaaccactcagcacgctgctaccttcat 332  Q
    ||||||||||||||||||||||||||||||||    
T  32253738 gctgaaaccactcagcacgctgctaccttcat 32253769  T

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Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 99 - 330
Target Start/End: Original strand, 32243012 - 32243243
Alignment:
Q  99 gtctaagaaggtgtcttgatctcccttcatcttcttcctcctcgggacttctttcatattcttcatcttcttgctgccactcaggactgatgatgctgag 198  Q
    ||||| ||| |||||||| ||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  32243012 gtctacgaatgtgtcttggtctccgttcatcttcttcctcctcgtgacttctttcgtattcttcatcttcttgctgccactcagggctgatgatgctgag 32243111  T
Q  199 accgccctctactctcacgatttggctcctctggtcgcgtggggattgtagtctcttagctgtatcctgatccgtgttgagagcctgcgctaaaaactct 298  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32243112 accgccctctactctcacgatttggctcctctggtcgcgtggagattgaagtctcttagctgtatcctgatccgtgttgagtgcctgcgctaaaaactct 32243211  T
Q  299 gagctgaaaccactcagcacgctgctaccttc 330  Q
    |||||||||||||||||||| |||||||||||    
T  32243212 gagctgaaaccactcagcacactgctaccttc 32243243  T

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Target: chr1; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 99 - 330
Target Start/End: Original strand, 32248750 - 32248981
Alignment:
Q  99 gtctaagaaggtgtcttgatctcccttcatcttcttcctcctcgggacttctttcatattcttcatcttcttgctgccactcaggactgatgatgctgag 198  Q
    ||||| ||| |||||||| ||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  32248750 gtctacgaatgtgtcttggtctccgttcatcttcttcctcctcgtgacttctttcgtattcttcatcttcttgctgccactcagggctgatgatgctgag 32248849  T
Q  199 accgccctctactctcacgatttggctcctctggtcgcgtggggattgtagtctcttagctgtatcctgatccgtgttgagagcctgcgctaaaaactct 298  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32248850 accgccctctactctcacgatttggctcctctggtcgcgtggagattgaagtctcttagctgtatcctgatccgtgttgagtgcctgcgctaaaaactct 32248949  T
Q  299 gagctgaaaccactcagcacgctgctaccttc 330  Q
    |||||||||||||||||||| |||||||||||    
T  32248950 gagctgaaaccactcagcacactgctaccttc 32248981  T

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Target: chr1; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 32242866 - 32242959
Alignment:
Q  1 ctggctatgtccgggatgtcttggatcccattctctttcttcctgactatgtccgggatgtcttgggtctcgctctctttcttcttgactatgt 94  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||| || ||||||    
T  32242866 ctggctatgtccgggatgtcttggatcccattctctttctttctgactatgtccgggacgtcttgggtctcgttctctttcttcctggctatgt 32242959  T

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Target: chr1; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 32248604 - 32248697
Alignment:
Q  1 ctggctatgtccgggatgtcttggatcccattctctttcttcctgactatgtccgggatgtcttgggtctcgctctctttcttcttgactatgt 94  Q
    ||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||| || ||||||    
T  32248604 ctggccatgtccgggacgtcttggatcccattctctttctttctgactatgtccgggacgtcttgggtctcgttctctttcttcctggctatgt 32248697  T

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Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 32242813 - 32242875
Alignment:
Q  32 tctctttcttcctgactatgtccgggatgtcttgggtctcgctctctttcttcttgactatgt 94  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||    
T  32242813 tctctttcttcctgactatgtccgggacgtcttgggtctcgctctctttcttcctggctatgt 32242875  T

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Target: chr1; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 32253385 - 32253447
Alignment:
Q  32 tctctttcttcctgactatgtccgggatgtcttgggtctcgctctctttcttcttgactatgt 94  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||    
T  32253385 tctctttcttcctgactatgtctgggatgtcttgggtctcgctctctttcttcctggctatgt 32253447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 32253400 - 32253489
Alignment:
Q  5 ctatgtccgggatgtcttggatcccattctctttcttcctgactatgtccgggatgtcttgggtctcgctctctttcttcttgactatgt 94  Q
    ||||||| |||||||||||| || |  |||||||||||||| |||||||||||||||||||| || |  ||||||||||| |||||||||    
T  32253400 ctatgtctgggatgtcttgggtctcgctctctttcttcctggctatgtccgggatgtcttggatcccattctctttcttcctgactatgt 32253489  T

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Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 32242828 - 32242917
Alignment:
Q  5 ctatgtccgggatgtcttggatcccattctctttcttcctgactatgtccgggatgtcttgggtctcgctctctttcttcttgactatgt 94  Q
    |||||||||||| ||||||| || |  |||||||||||||| |||||||||||||||||||| || |  ||||||||||  |||||||||    
T  32242828 ctatgtccgggacgtcttgggtctcgctctctttcttcctggctatgtccgggatgtcttggatcccattctctttctttctgactatgt 32242917  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 32242912 - 32242972
Alignment:
Q  5 ctatgtccgggatgtcttggatcccattctctttcttcctgactatgtccgggatgtcttg 65  Q
    |||||||||||| ||||||| || | ||||||||||||||| ||||||| ||||| |||||    
T  32242912 ctatgtccgggacgtcttgggtctcgttctctttcttcctggctatgtctgggatatcttg 32242972  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 32248650 - 32248710
Alignment:
Q  5 ctatgtccgggatgtcttggatcccattctctttcttcctgactatgtccgggatgtcttg 65  Q
    |||||||||||| ||||||| || | ||||||||||||||| ||||||| ||||| |||||    
T  32248650 ctatgtccgggacgtcttgggtctcgttctctttcttcctggctatgtctgggatatcttg 32248710  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 32248578 - 32248655
Alignment:
Q  17 tgtcttggatcccattctctttcttcctgactatgtccgggatgtcttgggtctcgctctctttcttcttgactatgt 94  Q
    |||||||| || | ||||||||||||||| | |||||||||| ||||||| || |  ||||||||||  |||||||||    
T  32248578 tgtcttgggtctcgttctctttcttcctggccatgtccgggacgtcttggatcccattctctttctttctgactatgt 32248655  T

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