View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17426_low_6 (Length: 336)
Name: NF17426_low_6
Description: NF17426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17426_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 326
Target Start/End: Complemental strand, 2332489 - 2332181
Alignment:
| Q |
16 |
aatatgccaacaaattttgtaaaatatcggttgaaatccatcatgtcctagggctttgtaagagtgcatagggaaaatagaatctttaatcctttccata |
115 |
Q |
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| T |
2332489 |
aatatgccaacaaattttgtaaaatatcggttgaaatccatcatgtcctagggctttgtaagagtgcatagggaaaatagaatctttaatcctttccata |
2332390 |
T |
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| Q |
116 |
gttacaggcaagagaagctggtccatcaagttaatgctaagagatggaatattatccagttgtaaactatatgagaggtttacagggatcatttgattgg |
215 |
Q |
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| T |
2332389 |
gtgacaggcaagagaagctggtccatcaagctaatgccaagagatggaatattatccagttgtaaactatatgagaggtttacagggatcatttgattgg |
2332290 |
T |
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| Q |
216 |
aatagattcataaaaaactttgaggcttcccttttgagagtgcttgcattcgtgcaccatatgttttccacattcaaaccagaaattttatttcgtcgtc |
315 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
2332289 |
gatagatgcataaaaaactttgaggcttcccttttgagagtgcttgcattcgtgcacc--atgttttccacattcaaaccagaaattttatttcgccgtc |
2332192 |
T |
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| Q |
316 |
ttctgatgatg |
326 |
Q |
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||||||||||| |
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| T |
2332191 |
ttctgatgatg |
2332181 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 1261823 - 1261909
Alignment:
| Q |
16 |
aatatgccaacaaattttgtaaaatatcggttgaaatccatcatgtcctagggctttgtaagagtgcatagggaaaatagaatcttt |
102 |
Q |
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|||||||||| || ||||| |||| || |||||||| ||||| | || ||||||||||||||||||| | |||||||| |||||| |
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| T |
1261823 |
aatatgccaataagttttgaaaaaaataggttgaaaaccatctggacccggggctttgtaagagtgcattgagaaaatagcatcttt |
1261909 |
T |
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