View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17426_low_9 (Length: 238)
Name: NF17426_low_9
Description: NF17426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17426_low_9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 35 - 238
Target Start/End: Complemental strand, 37667022 - 37666819
Alignment:
| Q |
35 |
ccatagagatctagaagataagcaaaagttcatgagacagatccacacattacgaaaacagggaaagggacaattgcaatggacaagacaacctcctctc |
134 |
Q |
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| T |
37667022 |
ccatagagatctagaagataagcaaaagttcatgagacagatccacacattacgaaaacagggaaagggacaattgcaatggacaagacaacctcctctc |
37666923 |
T |
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| Q |
135 |
ttgtcctctgtctgacaacaaaattagcaaataatcatcgtaaatcgcaaagaaattacaattaaaaaatctagtcatcacatttcctatcataaattta |
234 |
Q |
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| T |
37666922 |
ctgtcctctgtctgacaacaaaattagcaaataatcatcgtaaatcgcaaagaaattacaattaaaagatctagtcatcacatttcctatcataaattta |
37666823 |
T |
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| Q |
235 |
atca |
238 |
Q |
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|||| |
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| T |
37666822 |
atca |
37666819 |
T |
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