View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17427_high_1 (Length: 757)
Name: NF17427_high_1
Description: NF17427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17427_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 470; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 29 - 547
Target Start/End: Complemental strand, 2447260 - 2446743
Alignment:
| Q |
29 |
aaatgacaattaaatgtaatcacatgtgtcagttctttggagctttctataaatcaagcttaaggtttacaaagtacaacttatgtttaaatactctcct |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2447260 |
aaatgacaattaaatgtaatcacatgtgtcagttctttggagctttctattaatcaagcttaaggtttacaaagtacaacttatgtttaaatactctcct |
2447161 |
T |
|
| Q |
129 |
cgctcgagccacctggcccgctattcagtaaactgagccatatatatccgacaaaagcaaagtccaagctttccagcagaaatcatacttgagttgatca |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
2447160 |
cgctcgagccacctggcccgctattcagtaaactgagccatatatatccgacaaaagcaaactccaagctttccagcataaatcatacttgagttgatca |
2447061 |
T |
|
| Q |
229 |
gtcatcttatgccaagttatatatcaataaactaaccccattcagattcaatcaatgattaaattaagaaacatatttgtcataccataagactccaatt |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2447060 |
gtcatcttatgccaagttatatatcaataaactaaccccattcagattcaatcaatgattaaattatgaaacatatttgtcataccataagactccaatt |
2446961 |
T |
|
| Q |
329 |
aaatttccttaattccatgataaattgtgttacttacacaatcaaggattaaattaaactactataaaattaagttcttgtnnnnnnncacacacacgca |
428 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2446960 |
aaatttccttaattccatgataaattgtgttacttacacaatcaaggattaaattaaactactataaaattaagttcttgtaaaaaaa-acacacacgca |
2446862 |
T |
|
| Q |
429 |
gacacatggtatataagtacaaattatgaaatcgtgaaaatctaaagattcaataaatttgcataggaaccaaatccttgtgtatcatttgtcggtgtga |
528 |
Q |
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| T |
2446861 |
gacacatggtatataagtacaaattatgaaatcgtgaaaatctaaagattcaataaatttgcataggaaccaaatccttgtatatcatttgtcggtgtga |
2446762 |
T |
|
| Q |
529 |
accttgtaattacaaaaca |
547 |
Q |
| |
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||||||||||||||||||| |
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| T |
2446761 |
accttgtaattacaaaaca |
2446743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 572 - 687
Target Start/End: Complemental strand, 2446724 - 2446604
Alignment:
| Q |
572 |
taaccttgtaatttatcgaagatttgtcccatgatattgttttgatgataataaggaaccaaacttgttgactgtgtta-----tgttgtctttgaagtt |
666 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2446724 |
taaccttgtaatttatcgaagatttgtcccatgatattgttttgatgataataaggaaccaaacttgttgactgtgttatgttatgttgtctttgaagtt |
2446625 |
T |
|
| Q |
667 |
tgagagtggagtgaaggtaga |
687 |
Q |
| |
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| T |
2446624 |
tgagagtggagtgaaggtaga |
2446604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 59
Target Start/End: Complemental strand, 24764861 - 24764831
Alignment:
| Q |
29 |
aaatgacaattaaatgtaatcacatgtgtca |
59 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
24764861 |
aaatgacaattaaatgtaatcacatgtgtca |
24764831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 24547037 - 24547089
Alignment:
| Q |
71 |
ctttctataaatcaagcttaaggtttacaaagtacaacttatgtttaaatact |
123 |
Q |
| |
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|||||||| ||||||||||| |||||| |||||||||||| |||||||||||| |
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| T |
24547037 |
ctttctattaatcaagcttagggtttataaagtacaacttgtgtttaaatact |
24547089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 34372464 - 34372514
Alignment:
| Q |
73 |
ttctataaatcaagcttaaggtttacaaagtacaacttatgtttaaatact |
123 |
Q |
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|||||| | ||||||||| ||||||||||||||||||| | |||||||||| |
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| T |
34372464 |
ttctattattcaagcttagggtttacaaagtacaacttgtatttaaatact |
34372514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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