View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17427_high_20 (Length: 250)

Name: NF17427_high_20
Description: NF17427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17427_high_20
NF17427_high_20
[»] chr1 (4 HSPs)
chr1 (1-239)||(5054001-5054239)
chr1 (1-102)||(46446043-46446147)
chr1 (2-102)||(46672020-46672123)
chr1 (139-168)||(46446193-46446222)
[»] chr8 (7 HSPs)
chr8 (1-114)||(9860674-9860787)
chr8 (3-103)||(9842035-9842135)
chr8 (135-239)||(9860829-9860933)
chr8 (135-239)||(9842188-9842292)
chr8 (4-103)||(9847066-9847165)
chr8 (140-239)||(9903122-9903221)
chr8 (1-42)||(27361021-27361062)
[»] chr5 (8 HSPs)
chr5 (1-103)||(225400-225502)
chr5 (135-229)||(39576559-39576653)
chr5 (1-96)||(39572404-39572499)
chr5 (1-96)||(39576410-39576505)
chr5 (1-115)||(4146559-4146673)
chr5 (1-49)||(2326337-2326385)
chr5 (140-190)||(3561339-3561389)
chr5 (140-188)||(225560-225608)
[»] chr3 (1 HSPs)
chr3 (135-236)||(7257009-7257110)
[»] scaffold0658 (1 HSPs)
scaffold0658 (1-42)||(2835-2876)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 5054239 - 5054001
Alignment:
Q  1 ttatcatgagatgggaccttttgattatgttgctgcttgcggtcatgagcttgatattttgtatgtggtatttcgtttgtggatcaacgatcaaatcatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5054239 ttatcatgagatgggaccttttgattatgttgctgcttgcggtcatgagcttgatactttgtatgtggtatttcgtttgtggatcaacgatcaaatcatc 5054140  T
Q  101 tttaaagtatctctacttggaagagacatcaaacacatacattttggttacaatgtcaagaccaaacatttgacaaagattgagggcattaccatgggca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5054139 tttaaagtatctctacttggaagagacatcaaacacatacattttggttacaatgtcaagaccaaacatttgacaaagatcgagggcattaccatgggca 5054040  T
Q  201 attttgaggtatggcctcacgttaacagtttagtttcat 239  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  5054039 attttgaggtatggcctcacgtcaacagtttagtttcat 5054001  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 46446043 - 46446147
Alignment:
Q  1 ttatcatgagatgggaccttttgattatgttgctgcttgcggtcatgagcttgatattttgtat---gtggtatttcgtttgtggatcaacgatcaaatc 97  Q
    ||||||||||||||||| |||||||||||| ||||| || |||||||||||| ||| ||||| |   |||||||||||||| ||| ||||||||||||||    
T  46446043 ttatcatgagatgggacattttgattatgtggctgcctgtggtcatgagcttaataatttgtcttcggtggtatttcgtttttgggtcaacgatcaaatc 46446142  T
Q  98 atctt 102  Q
    |||||    
T  46446143 atctt 46446147  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 46672123 - 46672020
Alignment:
Q  2 tatcatgagatgggaccttttgattatgttgctgc---ttgcggtcatgagcttgatattttgtatgtggtatttcgtttgtggatcaacgatcaaatca 98  Q
    ||||||| |||||||| |||||||||||| |||||   ||| |||||| ||||||| ||||| |   |||||||| | ||||||||||||||| |||| |    
T  46672123 tatcatgcgatgggacattttgattatgtggctgcttgttgtggtcataagcttgaaattttttcgttggtattttgcttgtggatcaacgattaaatta 46672024  T
Q  99 tctt 102  Q
    ||||    
T  46672023 tctt 46672020  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 168
Target Start/End: Original strand, 46446193 - 46446222
Alignment:
Q  139 acattttggttacaatgtcaagaccaaaca 168  Q
    ||||||||||||||||||||||||||||||    
T  46446193 acattttggttacaatgtcaagaccaaaca 46446222  T

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Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 9860674 - 9860787
Alignment:
Q  1 ttatcatgagatgggaccttttgattatgttgctgcttgcggtcatgagcttgatattttgtatgtggtatttcgtttgtggatcaacgatcaaatcatc 100  Q
    ||||||||||||||||||||||||||||||  ||||||| ||||| |||||| | ||||||| ||||| ||||||||||||||||||| ||||||| |||    
T  9860674 ttatcatgagatgggaccttttgattatgtgtctgcttgtggtcaagagcttcagattttgtttgtggcatttcgtttgtggatcaaccatcaaattatc 9860773  T
Q  101 tttaaagtatctct 114  Q
    ||||||||| ||||    
T  9860774 tttaaagtagctct 9860787  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 9842035 - 9842135
Alignment:
Q  3 atcatgagatgggaccttttgattatgttgctgcttgcggtcatgagcttgatattttgtatgtggtatttcgtttgtggatcaacgatcaaatcatctt 102  Q
    ||||||||||||||||||||||||||||  ||||||| ||||||  |||| ||| |  | |||||   |||||||||||||||||||||||||| |||||    
T  9842035 atcatgagatgggaccttttgattatgtgtctgcttgtggtcataggcttaatactacggatgtgaagtttcgtttgtggatcaacgatcaaattatctt 9842134  T
Q  103 t 103  Q
    |    
T  9842135 t 9842135  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 135 - 239
Target Start/End: Original strand, 9860829 - 9860933
Alignment:
Q  135 acatacattttggttacaatgtcaagaccaaacatttgacaaagattgagggcattaccatgggcaattttgaggtatggcctcacgttaacagtttagt 234  Q
    |||| |||||||||||||||||||| || | ||| ||||||| ||| |||||||||    ||||  |||||||||||||| ||||| |||||||||||||    
T  9860829 acattcattttggttacaatgtcaaaactagacaattgacaatgatcgagggcattgatgtgggtgattttgaggtatggtctcacattaacagtttagt 9860928  T
Q  235 ttcat 239  Q
    |||||    
T  9860929 ttcat 9860933  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 239
Target Start/End: Original strand, 9842188 - 9842292
Alignment:
Q  135 acatacattttggttacaatgtcaagaccaaacatttgacaaagattgagggcattaccatgggcaattttgaggtatggcctcacgttaacagtttagt 234  Q
    |||||||||||||||||||||| |||||||  || |||||||||||||||| ||||  | | ||||| ||||| ||||| | ||||  ||||||| ||||    
T  9842188 acatacattttggttacaatgtgaagaccaggcaattgacaaagattgaggacattgacgttggcaactttgaagtatgtcttcacactaacagtctagt 9842287  T
Q  235 ttcat 239  Q
    |||||    
T  9842288 ttcat 9842292  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 9847066 - 9847165
Alignment:
Q  4 tcatgagatgggaccttttgattatgttgctgcttgcggtcatgagcttgatattttgtatgtggtatttcgtttgtggatcaacgatcaaatcatcttt 103  Q
    ||||||||||| |||||||| || | | | |||||| |||| ||   |||||||| ||  ||||||||||||||| |||||||| |||||||| ||||||    
T  9847066 tcatgagatggaaccttttgtttgtatgggtgcttgtggtcctggtattgatattatgagtgtggtatttcgtttttggatcaatgatcaaattatcttt 9847165  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 239
Target Start/End: Original strand, 9903122 - 9903221
Alignment:
Q  140 cattttggttacaatgtcaagaccaaacatttgacaaagattgagggcattaccatgggcaattttgaggtatggcctcacgttaacagtttagtttcat 239  Q
    |||||| |||||||||| ||||||||||| |||| ||||||||||| ||||  | ||||  ||||| | ||||||  ||||  ||||||| |||||||||    
T  9903122 catttttgttacaatgtgaagaccaaacaattgataaagattgaggacattgacgtgggagattttaaagtatggtttcacactaacagtctagtttcat 9903221  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 27361021 - 27361062
Alignment:
Q  1 ttatcatgagatgggaccttttgattatgttgctgcttgcgg 42  Q
    ||||||||||||||||||||||||||| |  |||||||||||    
T  27361021 ttatcatgagatgggaccttttgattacgaggctgcttgcgg 27361062  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 225400 - 225502
Alignment:
Q  1 ttatcatgagatgggaccttttgattatgttgctgcttgcggtcatgagcttgatattttgtatgtggtatttcgtttgtggatcaacgatcaaatcatc 100  Q
    ||||||||||||  ||||||||| |||||| |||| |||||||| || ||||  |||||| | ||||| |||||||||||||||||||||||||||||||    
T  225400 ttatcatgagatctgaccttttggttatgtggctgtttgcggtcgtgggcttagtattttttgtgtggcatttcgtttgtggatcaacgatcaaatcatc 225499  T
Q  101 ttt 103  Q
    |||    
T  225500 ttt 225502  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 135 - 229
Target Start/End: Original strand, 39576559 - 39576653
Alignment:
Q  135 acatacattttggttacaatgtcaagaccaaacatttgacaaagattgagggcattaccatgggcaattttgaggtatggcctcacgttaacagt 229  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||  |||  ||||||| ||||||| ||||  |||||||    
T  39576559 acatacattttagttacaatgtcaagaccaaacaattgacaaagattgagggcattgcctcgggtgattttgaagtatggcttcacactaacagt 39576653  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 39572404 - 39572499
Alignment:
Q  1 ttatcatgagatgggaccttttgattatgttgctgcttgcggtcatgagcttgatattttgtatgtggtatttcgtttgtggatcaacgatcaaat 96  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |  ||||||||||| ||  || | ||||| || | |||||||||||||||||    
T  39572404 ttatcatgagatgggaccttttgattatgttgctgcttgtggtaaccagcttgatattatgattgagatattttgtctatggatcaacgatcaaat 39572499  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 39576410 - 39576505
Alignment:
Q  1 ttatcatgagatgggaccttttgattatgttgctgcttgcggtcatgagcttgatattttgtatgtggtatttcgtttgtggatcaacgatcaaat 96  Q
    |||||||||||||||||||||  |||||||||||||| | ||| |  ||||| ||||| ||  || | ||||||||||||||||||||||||||||    
T  39576410 ttatcatgagatgggacctttcaattatgttgctgctagtggtaaccagcttaatattatgagtgcgatatttcgtttgtggatcaacgatcaaat 39576505  T

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Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 4146559 - 4146673
Alignment:
Q  1 ttatcatgagatgggaccttttgattatgttgctgcttgcggtcatgagcttgatattttgtatgtggtatttcgtttgtggatcaacgatcaaatcatc 100  Q
    |||||||||||||||||||||||||| |    |||||||||| |||||| || ||||| ||| |||||| ||| |||| ||||||||| ||||||| |||    
T  4146559 ttatcatgagatgggaccttttgattttccgactgcttgcggccatgagattcatattctgtgtgtggtgttttgtttctggatcaaccatcaaattatc 4146658  T
Q  101 tttaaagtatctcta 115  Q
     ||  ||||||||||    
T  4146659 cttcgagtatctcta 4146673  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 2326385 - 2326337
Alignment:
Q  1 ttatcatgagatgggaccttttgattatgttgctgcttgcggtcatgag 49  Q
    |||||||||||||||||| ||||||||||| ||| |||| |||||||||    
T  2326385 ttatcatgagatgggaccatttgattatgtggctacttgtggtcatgag 2326337  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 3561389 - 3561339
Alignment:
Q  140 cattttggttacaatgtcaagaccaaacatttgacaaagattgagggcatt 190  Q
    ||||||||||||||||||||||| | ||  ||||||||||| |||||||||    
T  3561389 cattttggttacaatgtcaagactagacgattgacaaagatagagggcatt 3561339  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 225560 - 225608
Alignment:
Q  140 cattttggttacaatgtcaagaccaaacatttgacaaagattgagggca 188  Q
    |||||| |||||||||||||||| | |||  ||||||||||||||||||    
T  225560 cattttagttacaatgtcaagactagacaactgacaaagattgagggca 225608  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 236
Target Start/End: Original strand, 7257009 - 7257110
Alignment:
Q  135 acatacattttggttacaatgtcaagaccaaacatttgacaaagattgagggcattaccatgggcaattttgaggtatggcctcacgttaacagtttagt 234  Q
    ||||| |||||||||| ||||| |||||||  || ||||| |||||||||| ||||   |||||||||||||| |||||| |||||  ||||||| ||||    
T  7257009 acatatattttggttataatgtgaagaccaggcaattgactaagattgaggacattggaatgggcaattttgaagtatggtctcacactaacagtctagt 7257108  T
Q  235 tt 236  Q
    ||    
T  7257109 tt 7257110  T

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Target: scaffold0658 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2876 - 2835
Alignment:
Q  1 ttatcatgagatgggaccttttgattatgttgctgcttgcgg 42  Q
    ||||||||||||||||||||||||||| |  |||||||||||    
T  2876 ttatcatgagatgggaccttttgattacgaggctgcttgcgg 2835  T

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