View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17427_high_28 (Length: 225)
Name: NF17427_high_28
Description: NF17427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17427_high_28 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 34671591 - 34671371
Alignment:
| Q |
8 |
gtcctctccctagaatgatagg---ccctaccatctgttgattacctaacaccgagtaatccactgtttctatgctcatcattatctagttcacctagtg |
104 |
Q |
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| T |
34671591 |
gtcctctccctggaatgataggaggccctaccaacttttgattaactaacaccgagtaatcaaccgtttctatgcacatcattatccaattcacccaccg |
34671492 |
T |
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| Q |
105 |
atgacaaaaacccatcttgatcattacttccttaaattacaaccaatcaattctatcatacgccttgcttgtgtctaattttagagcaacattacctttc |
204 |
Q |
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| T |
34671491 |
atgacaaaatcccatcttgatcattacttccttaagatacaaccaatcaattctatcatacgccttgcttatgtctaattttagagcaacattacctttc |
34671392 |
T |
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| Q |
205 |
tttccttttgttttcgacttc |
225 |
Q |
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| T |
34671391 |
ttcccttttgtttttgacttc |
34671371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 173
Target Start/End: Original strand, 27053908 - 27054031
Alignment:
| Q |
50 |
ctaacaccgagtaatccactgtttctatgctcatcattatctagttcacctagtgatgacaaaaacccatcttgatcattacttccttaaattacaacca |
149 |
Q |
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| T |
27053908 |
ctaacaccgagtaatcaacagtttcaatacacatcatgatccaagtcacccattggtgacaaaaacccattgtcatcatcacctccttcaagtacatcca |
27054007 |
T |
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| Q |
150 |
atcaattctatcatacgccttgct |
173 |
Q |
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| T |
27054008 |
atctattctgtcatatgccttgct |
27054031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 23061648 - 23061698
Alignment:
| Q |
147 |
ccaatcaattctatcatacgccttgcttgtgtctaattttagagcaacatt |
197 |
Q |
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| T |
23061648 |
ccaatcaattctatcatacgccttactaatgtctaattttagtgcaacatt |
23061698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 16325749 - 16325707
Alignment:
| Q |
146 |
accaatcaattctatcatacgccttgcttgtgtctaattttag |
188 |
Q |
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| T |
16325749 |
accaatcaattcgatcatacgccttgctgatgtctaattttag |
16325707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 173
Target Start/End: Original strand, 13108427 - 13108489
Alignment:
| Q |
111 |
aaaacccatcttgatcattacttccttaaattacaaccaatcaattctatcatacgccttgct |
173 |
Q |
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| T |
13108427 |
aaaacccattttaagcatcacttccttaagataaagccaatcaattctatcatacgccttgct |
13108489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 3236379 - 3236337
Alignment:
| Q |
146 |
accaatcaattctatcatacgccttgcttgtgtctaattttag |
188 |
Q |
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| T |
3236379 |
accaatcaattcgatcatacgccttgctgatgtctaattttag |
3236337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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