View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17427_high_29 (Length: 222)

Name: NF17427_high_29
Description: NF17427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17427_high_29
NF17427_high_29
[»] chr1 (15 HSPs)
chr1 (15-205)||(8926830-8927020)
chr1 (18-205)||(8939259-8939446)
chr1 (15-205)||(8962183-8962373)
chr1 (16-173)||(9257579-9257736)
chr1 (21-173)||(9299979-9300131)
chr1 (18-118)||(9466859-9466959)
chr1 (16-202)||(9242581-9242767)
chr1 (23-202)||(9364284-9364463)
chr1 (23-202)||(9337425-9337604)
chr1 (51-115)||(9236536-9236600)
chr1 (15-123)||(8979321-8979429)
chr1 (52-115)||(9377634-9377697)
chr1 (15-113)||(8861931-8862029)
chr1 (55-169)||(9420760-9420874)
chr1 (55-169)||(9437843-9437957)
[»] chr3 (1 HSPs)
chr3 (14-172)||(9171375-9171533)
[»] chr6 (1 HSPs)
chr6 (16-202)||(15910434-15910620)
[»] scaffold0690 (1 HSPs)
scaffold0690 (16-157)||(1486-1627)


Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 8926830 - 8927020
Alignment:
Q  15 acagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8926830 acagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggat 8926929  T
Q  115 tttatcgtgctttggcttatgactttttcccgaatggttcgttgcaaaacttcatttcttcacccgacagcaaggatgttttccttggttg 205  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8926930 tttatcgtgctctggtttatgactttttcccgaatggttcgttgcaaaacttcatttcttcacccgacaacaaggatgttttccttggttg 8927020  T

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Target: chr1; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 8939259 - 8939446
Alignment:
Q  18 gagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggatttt 117  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8939259 gagggagatgggagagagttcataaatgaagtgggaactatgggaaaaattcatcatgttaatgttgtccggttgcttggcttttgtgccgatggatttt 8939358  T
Q  118 atcgtgctttggcttatgactttttcccgaatggttcgttgcaaaacttcatttcttcacccgacagcaaggatgttttccttggttg 205  Q
    |||||||||||| ||||||||||||||| |||||||| |||||||| |||||||||||||| |||| |||||||||||||||||||||    
T  8939359 atcgtgctttggtttatgactttttcccaaatggttcattgcaaaatttcatttcttcacctgacaacaaggatgttttccttggttg 8939446  T

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Target: chr1; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 8962183 - 8962373
Alignment:
Q  15 acagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggat 114  Q
    ||||| ||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| || |||||||    
T  8962183 acagaaggagatgggagagagttcataaatgaagtaggaactatgggaaaaatccatcatgttaatgttgtccggttacttggcttttgcgctgatggat 8962282  T
Q  115 tttatcgtgctttggcttatgactttttcccgaatggttcgttgcaaaacttcatttcttcacccgacagcaaggatgttttccttggttg 205  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||    
T  8962283 tttatcgtgctttggtttatgactttttccctaatggttcgttgcaaaatttcatttcttcacctgacaacaaggatgttttccttggttg 8962373  T

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Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 9257736 - 9257579
Alignment:
Q  16 cagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggatt 115  Q
    |||| ||||||||||  |||||||||||||| |||||||||||||| |||||||| ||| | |||| ||| || ||||||||||||||||||||||||||    
T  9257736 cagaaggagatgggaaggagttcataaatgaagtgggaactatgggtaaaatccaccatctcaatgctgtccgcttgcttggcttttgtgccgatggatt 9257637  T
Q  116 ttatcgtgctttggcttatgactttttcccgaatggttcgttgcaaaacttcatttct 173  Q
    | |||||||| | |  |||||||| ||||| |||||||||||||| || |||||||||    
T  9257636 tcatcgtgctctagtctatgacttcttcccaaatggttcgttgcagaaattcatttct 9257579  T

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Target: chr1; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 173
Target Start/End: Original strand, 9299979 - 9300131
Alignment:
Q  21 ggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggattttatc 120  Q
    ||||||||||  |||||||||||||| |||||||| ||||| |||||||| ||| | |||||||| || ||||||||||||||||||||||||||| |||    
T  9299979 ggagatgggaaggagttcataaatgaagtgggaacaatgggcaaaatccaccatctcaatgttgtccgtttgcttggcttttgtgccgatggatttcatc 9300078  T
Q  121 gtgctttggcttatgactttttcccgaatggttcgttgcaaaacttcatttct 173  Q
    ||||| | |  |||||||| ||||| | |||||||||||| || |||||||||    
T  9300079 gtgctctagtctatgacttcttcccaagtggttcgttgcagaaattcatttct 9300131  T

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Target: chr1; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 9466959 - 9466859
Alignment:
Q  18 gagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggatttt 117  Q
    ||||||||||| |  |||||||||||||| ||||||||||||||||||||||||||| |||||||||| || ||||||||||| || || ||||||||||    
T  9466959 gagggagatggtaaggagttcataaatgaagtgggaactatgggaaaaatccatcatcttaatgttgtccgtttgcttggcttctgcgctgatggatttt 9466860  T
Q  118 a 118  Q
    |    
T  9466859 a 9466859  T

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Target: chr1; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 9242767 - 9242581
Alignment:
Q  16 cagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggatt 115  Q
    |||||| ||||||||  || ||||||||||| |||||||| ||||| || || |||||| | ||||| ||||| ||||||||||  || || ||||||||    
T  9242767 cagaggaagatgggaaggaattcataaatgaagtgggaaccatgggcaagattcatcatctaaatgtcgttcgtttgcttggctactgcgcggatggatt 9242668  T
Q  116 ttatcgtgctttggcttatgactttttcccgaatggttcgttgcaaaacttcatttcttcacccgacagcaaggatgttttccttgg 202  Q
    |   |||||||| |  |||||||||||||| |||||||||||||| || ||||||||||| ||  ||| ||| |||| |||||||||    
T  9242667 tcgccgtgctttagtctatgactttttcccaaatggttcgttgcagaaattcatttcttccccaaacaacaaagatgatttccttgg 9242581  T

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Target: chr1; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 202
Target Start/End: Original strand, 9364284 - 9364463
Alignment:
Q  23 agatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggattttatcgt 122  Q
    ||||||||  || ||||||||||| |||||||| ||||| ||||| || ||| | ||||| ||||| ||||||||||| || || ||||| |||  ||||    
T  9364284 agatgggaaggaattcataaatgaagtgggaaccatgggcaaaattcaccatctcaatgtcgttcgtttgcttggcttctgcgcagatggttttcgtcgt 9364383  T
Q  123 gctttggcttatgactttttcccgaatggttcgttgcaaaacttcatttcttcacccgacagcaaggatgttttccttgg 202  Q
    ||||| |  |||||||||||  | |||||||||||||| || ||||||||| |  |  ||||||| |||| |||||||||    
T  9364384 gctttagtctatgactttttttcaaatggttcgttgcagaaattcatttctcccgcgaacagcaaagatgatttccttgg 9364463  T

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Target: chr1; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 23 - 202
Target Start/End: Original strand, 9337425 - 9337604
Alignment:
Q  23 agatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggattttatcgt 122  Q
    ||||||||  || ||||||||||| |||||||| ||||| ||||| || ||| | ||||| ||||| ||||| ||||| || || ||||| |||  ||||    
T  9337425 agatgggaaggaattcataaatgaagtgggaaccatgggcaaaattcaccatctcaatgtcgttcgtttgctcggcttctgcgcagatggttttcgtcgt 9337524  T
Q  123 gctttggcttatgactttttcccgaatggttcgttgcaaaacttcatttcttcacccgacagcaaggatgttttccttgg 202  Q
    ||||| |  |||||||||||  | |||||||||||||| || ||||||||| |  |  ||||||| |||| |||||||||    
T  9337525 gctttagtctatgactttttttcaaatggttcgttgcagaaattcatttctcccgcgaacagcaaagatgatttccttgg 9337604  T

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Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 9236600 - 9236536
Alignment:
Q  51 ggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggatt 115  Q
    ||||||||||||||||| |||||||| ||||||||||| || || || |||||||| ||||||||    
T  9236600 ggaactatgggaaaaattcatcatgtcaatgttgttcgcttactcggattttgtgctgatggatt 9236536  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 123
Target Start/End: Complemental strand, 8979429 - 8979321
Alignment:
Q  15 acagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggat 114  Q
    ||||| ||||| ||||  |||||||| |  || ||||||| ||||||||||||||| ||  | ||||||||||| ||||||||||| ||||| || |||     
T  8979429 acagaaggagacgggaaagagttcattagcgaagtgggaattatgggaaaaatccaccacatcaatgttgttcgattgcttggcttctgtgcagagggaa 8979330  T
Q  115 tttatcgtg 123  Q
    || ||||||    
T  8979329 ttcatcgtg 8979321  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 9377634 - 9377697
Alignment:
Q  52 gaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggatt 115  Q
    |||||||||||||||| |||||| | ||||||||||| ||||| || || ||||| ||||||||    
T  9377634 gaactatgggaaaaattcatcatttcaatgttgttcgcttgctcggattctgtgctgatggatt 9377697  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 8862029 - 8861931
Alignment:
Q  15 acagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatgga 113  Q
    ||||||||||| ||||  |||||||| ||||| ||||||| |||||| |||||||| ||  | || || ||||| ||||||||||| || || ||||||    
T  8862029 acagagggagaagggaaagagttcatcaatgaagtgggaattatgggcaaaatccaccacatcaacgtggttcgtttgcttggcttctgcgcagatgga 8861931  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 169
Target Start/End: Complemental strand, 9420874 - 9420760
Alignment:
Q  55 ctatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggattttatcgtgctttggcttatgactttttcccgaatggttc 154  Q
    ||||||||||||| |||||  | ||||||||||| ||| |||| ||||| ||||||||||  || |||||| | | |||| | || || || ||||||||    
T  9420874 ctatgggaaaaattcatcacatcaatgttgttcgcttggttggattttgcgccgatggatcctaccgtgctcttgtttataatttctttccaaatggttc 9420775  T
Q  155 gttgcaaaacttcat 169  Q
    ||| || ||||||||    
T  9420774 gttacagaacttcat 9420760  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 169
Target Start/End: Complemental strand, 9437957 - 9437843
Alignment:
Q  55 ctatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggattttatcgtgctttggcttatgactttttcccgaatggttc 154  Q
    ||||||||||||| |||||  | ||||||||||| ||| |||| ||||| ||||||||||  || |||||| | | |||| | || || || ||||||||    
T  9437957 ctatgggaaaaattcatcacatcaatgttgttcgcttggttggattttgcgccgatggatcctaccgtgctcttgtttataatttctttccaaatggttc 9437858  T
Q  155 gttgcaaaacttcat 169  Q
    ||| || ||||||||    
T  9437857 gttacagaacttcat 9437843  T

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Target: chr3 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 14 - 172
Target Start/End: Original strand, 9171375 - 9171533
Alignment:
Q  14 cacagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatgga 113  Q
    |||||||||||||||||  |||||||||||||| |||||||||||||| |||||||| ||| | |||||||| || |||||||||||||| |||||||||    
T  9171375 cacagagggagatgggaaggagttcataaatgaagtgggaactatgggcaaaatccaccatctaaatgttgtccgtttgcttggcttttgcgccgatgga 9171474  T
Q  114 ttttatcgtgctttggcttatgactttttcccgaatggttcgttgcaaaacttcatttc 172  Q
    ||| |||||||| | |  ||||| |||||||| |||||||| ||||| || ||||||||    
T  9171475 tttcatcgtgctctagtctatgattttttcccaaatggttctttgcagaaattcatttc 9171533  T

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Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 15910620 - 15910434
Alignment:
Q  16 cagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggatt 115  Q
    |||||||||||||||  || ||||||||||| |||||||| ||||| |||||||| ||| | ||||| ||||| ||||| ||||||||  | ||||| ||    
T  15910620 cagagggagatgggaaggaattcataaatgaagtgggaaccatgggcaaaatccaccatctcaatgtcgttcgtttgctcggcttttgctcagatggttt 15910521  T
Q  116 ttatcgtgctttggcttatgactttttcccgaatggttcgttgcaaaacttcatttcttcacccg-acagcaaggatgttttccttgg 202  Q
    | |||||||||| | |||||||||||| || ||||||||||| ||||| ||||| || ||||||| ||| ||| |||| |||||||||    
T  15910520 tcatcgtgctttagtttatgacttttttccaaatggttcgttacaaaaattcatatc-tcacccgaacaacaaagatgatttccttgg 15910434  T

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Target: scaffold0690 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 1486 - 1627
Alignment:
Q  16 cagagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggatt 115  Q
    |||||||||||||||  || ||||||||||| |||||||| ||||| |||||||| ||| | ||||| ||||| |||||||||||||| || ||||| ||    
T  1486 cagagggagatgggaaggaattcataaatgaagtgggaaccatgggcaaaatccaccatctcaatgtcgttcgtttgcttggcttttgcgcagatggttt 1585  T
Q  116 ttatcgtgctttggcttatgactttttcccgaatggttcgtt 157  Q
    |  ||||||||| | |||||||||||| || |||||||||||    
T  1586 tcgtcgtgctttagtttatgacttttttccaaatggttcgtt 1627  T

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