View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17427_high_3 (Length: 448)
Name: NF17427_high_3
Description: NF17427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17427_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 11 - 429
Target Start/End: Original strand, 34314803 - 34315221
Alignment:
| Q |
11 |
cacagactccaacgtaactgaccgcataaaactaaacgttggcggtaagctcttcgaaacaactctttccacaatccggtccggcggtccagactctctc |
110 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34314803 |
cacagactccaacgtaactgaccgcataaaactcaacgttggcggtaagctcttcgaaacaactctttccacaatccggtccggcggtccagactctctc |
34314902 |
T |
|
| Q |
111 |
cttttcgcattatcaaaccgtttttccaacgacccaaacccggttttcatagaccgcgacccagaaatcttctccgtcttcctctctctcctccgcacca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34314903 |
cttttcgcattatcaaaccgtttttccaacgacccaaacccggttttcatagaccgcgacccagaaatcttctccgtcttcctctctctcctccgcacca |
34315002 |
T |
|
| Q |
211 |
accaccttccctccactgcccgccgcttctccaaacaagaactcgccgacgaagctctcttctatggtattgactctcatctccgaaatgctacttctcc |
310 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34315003 |
accaccttccctccactgcccgccgcttctccaaacaagaactcgccgacgaagctctcttctatggtattgactctcatctccgaaatgctacttctcc |
34315102 |
T |
|
| Q |
311 |
acctccgttctccggcatcgacgcttccatcgttgcctccgtccgacctgcatcggaaggattgtcttctactttcaccgctgcggagaacggttccgtt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34315103 |
acctccgttctccggcatcgacgcttccatcgttgcctccgtccgacctgcatcggaaggattgtcttctactttcaccgctgcggagaacggttccgtt |
34315202 |
T |
|
| Q |
411 |
tggattgctcacggtggtc |
429 |
Q |
| |
|
||||||||||||||||||| |
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| T |
34315203 |
tggattgctcacggtggtc |
34315221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 22061248 - 22061025
Alignment:
| Q |
11 |
cacagactccaacgtaactgaccgcataaaactaaacgttggcggtaagctcttcgaaacaactc-tttccacaatccggtccggcggtccagactctct |
109 |
Q |
| |
|
|||||||| |||| ||||||||||||||||| ||||||| |||||||||||||||||| | |||| ||||||| |||||| | |||||| ||||| |
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| T |
22061248 |
cacagacttaaacgcaactgaccgcataaaac-----gttggcgataagctcttcgaaacaacccctttcgacaatcctgtccggtgatccagattctct |
22061154 |
T |
|
| Q |
110 |
ccttttcgcattatcaaaccgtttttccaacgacccaaacccggttttcatagaccgcgacccagaaatcttctccgtcttcctctctctcctccgcacc |
209 |
Q |
| |
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| | |||||| | |||| |||||||| |||||||||||| | |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
22061153 |
cttcttcgcactctcaagccgttttttcaacgacccaaatttgattttcatagaccgcaacccataaatcttctccgtcttcctctctctcctccgcacc |
22061054 |
T |
|
| Q |
210 |
aaccaccttccctccactgcccgccgctt |
238 |
Q |
| |
|
|||||||||||||||||| ||||||||| |
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| T |
22061053 |
aaccaccttccctccactagccgccgctt |
22061025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 11201122 - 11201185
Alignment:
| Q |
180 |
ttctccgtcttcctctctctcctccgcaccaaccaccttccctccactgcccgccgcttctcca |
243 |
Q |
| |
|
||||| |||| ||| |||||||||| |||||||||||| ||||||| | |||||||||||||| |
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|
| T |
11201122 |
ttctctgtctacctgtctctcctccacaccaaccacctcccctccatcgtccgccgcttctcca |
11201185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 194 - 429
Target Start/End: Original strand, 40947184 - 40947417
Alignment:
| Q |
194 |
ctctctcctccgcaccaaccaccttccctccactgcccgccgcttctccaaacaagaactcgccgacgaagctctcttctatggtattgactctcatctc |
293 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||| ||| |
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| T |
40947184 |
ctctctcctccgcgccaaccacctcccctccactgcccgccgcttctccaaacaagaactc--cgataaagctctcttctatggtattgacaatcacctc |
40947281 |
T |
|
| Q |
294 |
cgaaatgctacttctccacctccgttctccggcatcgacgcttccatcgttgcctccgtccgacctgcatcggaaggattgtcttctactttcaccgctg |
393 |
Q |
| |
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|| || ||||||||||| |||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||| |||||||||||||| || |
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| T |
40947282 |
cgcaacgctacttctccgcctccgttctccggcatcgacgcttccatcgtcgtctccgtccgtcctgcatcggaaggattatcttctactttcacagcca |
40947381 |
T |
|
| Q |
394 |
cggagaacggttccgtttggattgctcacggtggtc |
429 |
Q |
| |
|
||||||| |||||| |||||||||| |||||||| |
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|
| T |
40947382 |
cggagaatggttccacttggattgctatcggtggtc |
40947417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 194 - 419
Target Start/End: Original strand, 26955914 - 26956137
Alignment:
| Q |
194 |
ctctctcctccgcaccaaccaccttccctccactgcccgccgcttctccaaacaagaactcgccgacgaagctctcttctatggtattgactctcatctc |
293 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||| ||| |
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| T |
26955914 |
ctctctcctccgcgccaaccacctcccctccactgcccgccgcttctccaaacaagaactc--cgataaagctctcttctatggtattgacaatcacctc |
26956011 |
T |
|
| Q |
294 |
cgaaatgctacttctccacctccgttctccggcatcgacgcttccatcgttgcctccgtccgacctgcatcggaaggattgtcttctactttcaccgctg |
393 |
Q |
| |
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|| || ||||||||||| |||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||| |||||||||||||| || |
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| T |
26956012 |
cgcaacgctacttctccgcctccgttctccggcatcgacgcttccatcgtcgtctccgtccgtcctgcatcggaaggattatcttctactttcacagcca |
26956111 |
T |
|
| Q |
394 |
cggagaacggttccgtttggattgct |
419 |
Q |
| |
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||||||| |||||| |||||||||| |
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|
| T |
26956112 |
cggagaatggttccacttggattgct |
26956137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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