View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17427_high_33 (Length: 204)
Name: NF17427_high_33
Description: NF17427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17427_high_33 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 3020368 - 3020571
Alignment:
| Q |
1 |
ttctaaaatatcacttcatatcaatgagtgacgtgcccggtttgtgtcactatatgacaccaagacgacactgacacatgtgatttccttcaactactct |
100 |
Q |
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| T |
3020368 |
ttctaaaatatcacttcatatcaatgagtgatgtgcccggtttgtgtcactatatgacacctagacgacactgaaacatgtgatttccttcaatgactct |
3020467 |
T |
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| Q |
101 |
tatttttcaaaattattaccggcatgattttaaattgcagtcctcaaccgcatttgcggcaggaagcagaaatattgtggattttgaagtctccacaatg |
200 |
Q |
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| T |
3020468 |
tatttttcaaaattattaccggcatgattttaaattgcagtcctcaaccgcatttgcggcaggaagcagaaatattgtggattttgaagtctccacaatg |
3020567 |
T |
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| Q |
201 |
gcat |
204 |
Q |
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|||| |
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| T |
3020568 |
gcat |
3020571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 53 - 198
Target Start/End: Original strand, 3010362 - 3010501
Alignment:
| Q |
53 |
tatgacaccaagacgacactgacaca-tgtgatttccttcaactactcttatttttcaaaattattaccggcatgattttaaattgcagtcctcaaccgc |
151 |
Q |
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| T |
3010362 |
tatgacaccaatacgacactgacacaatgtgatttcattcaattgctttcattt----aaattattaccga---gattttaaattgcagccctcaaccgc |
3010454 |
T |
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| Q |
152 |
atttgcggcaggaagcagaaatattgtggattttgaagtctccacaa |
198 |
Q |
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| T |
3010455 |
gtttgcgccaggcggcatcaatattgtggatatttaagtctccacaa |
3010501 |
T |
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