View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17427_high_7 (Length: 395)

Name: NF17427_high_7
Description: NF17427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17427_high_7
NF17427_high_7
[»] chr6 (40 HSPs)
chr6 (8-379)||(27604300-27604672)
chr6 (7-379)||(26802661-26803032)
chr6 (7-379)||(27592617-27592988)
chr6 (7-379)||(27677216-27677582)
chr6 (7-379)||(27679165-27679536)
chr6 (7-379)||(27706000-27706370)
chr6 (8-172)||(27698297-27698461)
chr6 (8-379)||(27427208-27427573)
chr6 (7-135)||(27718219-27718347)
chr6 (7-135)||(27610842-27610970)
chr6 (232-379)||(28786677-28786824)
chr6 (232-379)||(28792798-28792945)
chr6 (235-379)||(28781543-28781687)
chr6 (7-205)||(26884384-26884580)
chr6 (7-126)||(28786497-28786616)
chr6 (7-126)||(28792618-28792737)
chr6 (7-126)||(26861832-26861951)
chr6 (7-126)||(28781358-28781477)
chr6 (258-379)||(27698182-27698301)
chr6 (313-379)||(27610716-27610782)
chr6 (20-379)||(26646711-26647065)
chr6 (20-379)||(26752679-26753033)
chr6 (7-192)||(27530983-27531165)
chr6 (20-162)||(25538772-25538914)
chr6 (318-379)||(27718095-27718156)
chr6 (20-150)||(25579951-25580081)
chr6 (20-150)||(26143097-26143227)
chr6 (20-126)||(27214652-27214758)
chr6 (20-126)||(27234470-27234576)
chr6 (263-379)||(25539013-25539129)
chr6 (263-379)||(26143338-26143454)
chr6 (340-379)||(27530897-27530936)
chr6 (7-45)||(27724775-27724813)
chr6 (20-117)||(26656221-26656318)
chr6 (20-117)||(26762192-26762289)
chr6 (20-62)||(25506897-25506939)
chr6 (343-376)||(25483609-25483642)
chr6 (20-117)||(27337923-27338020)
chr6 (20-117)||(27398663-27398760)
chr6 (343-379)||(25580272-25580308)
[»] scaffold0003 (1 HSPs)
scaffold0003 (8-379)||(59790-60155)
[»] chr4 (10 HSPs)
chr4 (8-379)||(18073982-18074347)
chr4 (26-379)||(18731096-18731440)
chr4 (236-379)||(18723677-18723819)
chr4 (236-379)||(18655069-18655211)
chr4 (236-379)||(18698992-18699134)
chr4 (236-379)||(18679152-18679301)
chr4 (37-117)||(18655322-18655402)
chr4 (37-117)||(18723930-18724010)
chr4 (27-117)||(18699245-18699335)
chr4 (27-117)||(18679412-18679502)
[»] scaffold0349 (4 HSPs)
scaffold0349 (7-135)||(3260-3389)
scaffold0349 (7-135)||(14196-14324)
scaffold0349 (318-379)||(3135-3196)
scaffold0349 (313-366)||(14082-14135)
[»] scaffold0419 (2 HSPs)
scaffold0419 (235-379)||(7929-8073)
scaffold0419 (7-117)||(7744-7854)
[»] scaffold0277 (4 HSPs)
scaffold0277 (235-379)||(13271-13415)
scaffold0277 (232-379)||(4308-4457)
scaffold0277 (7-117)||(4529-4639)
scaffold0277 (7-117)||(13490-13600)
[»] chr1 (5 HSPs)
chr1 (232-379)||(267936-268094)
chr1 (20-125)||(28127516-28127621)
chr1 (29-125)||(28164200-28164296)
chr1 (46-117)||(268202-268273)
chr1 (238-289)||(28164048-28164100)


Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 40)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 8 - 379
Target Start/End: Complemental strand, 27604672 - 27604300
Alignment:
Q  8 aagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttc 107  Q
    |||||| |||||||||| |||| ||||||||||||||| || | |||||  |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27604672 aagcattggctgagcataaaaaaaggtttcaaaatgatgaggataacataaagaggttgcagcgatggaaagtggctctgagccaggctgctaacttttc 27604573  T
Q  108 cggctaccatgatagtcctcctaggtactcaacattacttaaatcctatttttcccttttgtattttctttattcaatttcaattgcccaataatctcat 207  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27604572 cggctaccatgatagtcctcctgggtactcaacactacataaatcctatttttcccttttgtattttctttattcaatttcaattacccaataatctcat 27604473  T
Q  208 attcaaggttaaatgagatcaaataccttttttatttacgtttttaaa-aagtattagttatttatatgtcacaatagttagaaatgtataatatattct 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27604472 attcaaggttaaatgagatcaaataccttttttatttacgtttttaaacaagtattagttatttatatgtcaaaatagttagaaatgtataatatattct 27604373  T
Q  307 gagtctacatggatgtgattgtgacgttgttacatactaacttattttattggacatgaatagatatgaatac 379  Q
    |||| ||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  27604372 gagtgtacatggatgtgattatgatgttgttacatactaacttatcttattggacatgaatagatatgaatac 27604300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 379
Target Start/End: Original strand, 26802661 - 26803032
Alignment:
Q  7 gaagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaactttt 106  Q
    ||||||| ||||||||||||||| |||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |    
T  26802661 gaagcattggctgagcatgaaaaaaggtttcaaaatgataaggataacatggagaggttggagcgatggaaagtggctctgagccaggctgctaacttgt 26802760  T
Q  107 ccggctaccatgatagtcctcctaggtactcaacattacttaaatcctatttttcccttttgtattttctttattcaatttcaattgcccaataatctca 206  Q
    ||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||| |||||| ||| ||||| ||||||| |||||||||||||    
T  26802761 ccggctaccatgatagtcctcctcggtacccaactttacttaaatcctatttttcccttttatattttatttcttcaacttcaatttcccaataatctca 26802860  T
Q  207 tattcaaggttaaatgagatcaaataccttttttatttacgtttttaaa-aagtattagttatttatatgtcacaatagttagaaatgtataatatattc 305  Q
    | || ||||||||||| |   |||||||||| |||| |||||||||||| |||||||||||||||||||||   |||||||||||||||||||||||||     
T  26802861 tcttaaaggttaaatggg---aaatacctttcttatatacgtttttaaacaagtattagttatttatatgttgaaatagttagaaatgtataatatatta 26802957  T
Q  306 tgagtctacatggatgtgattgtgacgttgt---tacatactaacttattttattggacatgaatagatatgaatac 379  Q
    ||||  ||||||||||||||||||| |||||   ||||||||||||||| || ||||||||||||||||||||||||    
T  26802958 tgag--tacatggatgtgattgtgatgttgttagtacatactaacttatcttgttggacatgaatagatatgaatac 26803032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 7 - 379
Target Start/End: Complemental strand, 27592988 - 27592617
Alignment:
Q  7 gaagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaactttt 106  Q
    ||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||  ||||||||||| ||||||||||| |    
T  27592988 gaagcattggctgagcatgaaaagaggtttcaaaatgatccgaaaaacatggagaggttgcagggatggaaagacgctctgagccaggctgctaacttgt 27592889  T
Q  107 ccggctaccatgatagtcctcctaggtactcaacattacttaaatcctatttttcccttttgtattttctttattcaatttcaattgcccaataatctca 206  Q
    ||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||| |||||| ||| ||||| |||||||   |||||||||||    
T  27592888 ccggctaccatgatagtcctcctgggtacccaactttacttaaatcctatttttcccttttctattttatttcttcaacttcaattttacaataatctca 27592789  T
Q  207 tattcaaggttaaatgagatcaaataccttttttatttac-gtttttaaaaag---tattagttatttatatgtcacaatagttagaaatgtataatata 302  Q
    | || ||||||||| | |   ||||||||||||||| ||| ||||| || |||   |||||||||||||||||||  ||||||||||||||||||||| |    
T  27592788 tcttaaaggttaaaaggg---aaataccttttttatatacagttttaaacaagtactattagttatttatatgtcgaaatagttagaaatgtataataca 27592692  T
Q  303 ttctgagtctacatggatgtgattgtgacgttgttacatactaacttattttattggacatgaatagatatgaatac 379  Q
    |||| ||  ||||||||||||||||||| ||||||| | |||||||||| |||||| ||||||||||||||||||||    
T  27592691 ttcttag--tacatggatgtgattgtgatgttgttagacactaacttatcttattgcacatgaatagatatgaatac 27592617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 7 - 379
Target Start/End: Complemental strand, 27677582 - 27677216
Alignment:
Q  7 gaagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaactttt 106  Q
    ||||||| |||||||||||||||||||||||||||||||  ||||| |||||||||||||||| ||||||||| |||||||||||| ||||||||||| |    
T  27677582 gaagcattggctgagcatgaaaagaggtttcaaaatgatccgaaaagcatggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgt 27677483  T
Q  107 ccggctaccatgatagtcctcctaggtactcaacattacttaaatcctatttttcccttttgtattttctttattcaatttcaattgcccaataatctca 206  Q
    ||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||| |||||| ||| ||||| ||||||| | |||||||||||    
T  27677482 ccggctaccatgatagtcctcctgggtacccaactttacttaaatcctatttttcccttttctattttatttcttcaacttcaatttcacaataatctca 27677383  T
Q  207 tattcaaggttaaatgagatcaaataccttttttatttacgtttttaaaa--agtattagttatttatatgtcacaatagttagaaatgtataatatatt 304  Q
    | || ||||||||| | |   ||||||||||||||| |||  ||||||||  | |||||||||||||||||||  ||||||||||||||||||||| |||    
T  27677382 tcttaaaggttaaaaggg---aaataccttttttatatacagttttaaaagtactattagttatttatatgtcgaaatagttagaaatgtataatacatt 27677286  T
Q  305 ctgagtctacatggatgtgattgtgacgttgttacatactaacttattttattggacatgaatagatatgaatac 379  Q
       ||  ||||||||||||||||||| ||||||| | |||||||||| |||||| ||||||||||||||||||||    
T  27677285 ---ag--tacatggatgtgattgtgatgttgttagacactaacttatcttattgcacatgaatagatatgaatac 27677216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 379
Target Start/End: Original strand, 27679165 - 27679536
Alignment:
Q  7 gaagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaactttt 106  Q
    ||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||  ||||||||  |||||||||||| ||||||||||| |    
T  27679165 gaagcattggctgagcatgaaaagaggtttcaaaatgatccgaaaaacatggagaggttgcaaggatggaaaaaggctctgagccaggctgctaacttgt 27679264  T
Q  107 ccggctaccatgatagtcctcctaggtactcaacattacttaaatcctatttttcccttttgtattttctttattcaatttcaattgcccaataatctca 206  Q
    ||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||| |||||| ||| ||||| |||||||   |||||||||||    
T  27679265 ccggctaccatgatagtcctcctgggtacccaactttacttaaatcctatttttcccttttctattttatttcttcaacttcaattttacaataatctca 27679364  T
Q  207 tattcaaggttaaatgagatcaaataccttttttatttac-gtttttaaaaag---tattagttatttatatgtcacaatagttagaaatgtataatata 302  Q
    | || ||||||||| | |   ||||||||||||||| ||| ||||| || |||   |||||||||||||||||||  ||||||||||||||||||||| |    
T  27679365 tcttaaaggttaaaaggg---aaataccttttttatatacagttttaaacaagtactattagttatttatatgtcgaaatagttagaaatgtataataca 27679461  T
Q  303 ttctgagtctacatggatgtgattgtgacgttgttacatactaacttattttattggacatgaatagatatgaatac 379  Q
    |||| ||  ||||||||||||||||||| ||||||| | |||||||||| |||||| ||||||||||||||||||||    
T  27679462 ttcttag--tacatggatgtgattgtgatgttgttagacactaacttatcttattgcacatgaatagatatgaatac 27679536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 379
Target Start/End: Complemental strand, 27706370 - 27706000
Alignment:
Q  7 gaagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaactttt 106  Q
    ||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||| |    
T  27706370 gaagcattggctgagcatgaaaagaggtttcaaaatgatccgaaaaacatggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgt 27706271  T
Q  107 ccggctaccatgatagtcctcctaggtactcaacattacttaaatcctatttttcccttttgtattttctttattcaatttcaattgcccaataatctca 206  Q
    ||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||| |||||| ||| ||||| ||||||| | |||||||||||    
T  27706270 ccggctaccatgatagtcctcctgggtacccaactttacttaaatcctatttttcccttttctattttatttcttcaacttcaatttcacaataatctca 27706171  T
Q  207 tattcaaggttaaatgagatcaaataccttttttatttac-gtttttaaaaag---tattagttatttatatgtcacaatagttagaaatgtataatata 302  Q
    | || ||| ||||| |     ||||||||||||||| ||| ||||| || |||   |||||||||||||||||||  |||||||||||||| |||||| |    
T  27706170 tcttaaagtttaaagg----gaaataccttttttatatacagttttaaacaagtactattagttatttatatgtcgaaatagttagaaatgaataataca 27706075  T
Q  303 ttctgagtctacatggatgtgattgtgacgttgttacatactaacttattttattggacatgaatagatatgaatac 379  Q
    |||| ||  |||||||||||||||| || ||||||| | |||||||||| |||||| ||||||||||||||||||||    
T  27706074 ttcttag--tacatggatgtgattgggatgttgttagacactaacttatcttattgcacatgaatagatatgaatac 27706000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 8 - 172
Target Start/End: Complemental strand, 27698461 - 27698297
Alignment:
Q  8 aagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttc 107  Q
    |||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||| ||    
T  27698461 aagcattggctgagcatgaaaagaggtttcaaaatgatccgaaaaacatggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgtc 27698362  T
Q  108 cggctaccatgatagtcctcctaggtactcaacattacttaaatcctatttttcccttttgtatt 172  Q
    ||||||||||||||||||||| |||||| |||| ||||||||||||||| |||||||||||||||    
T  27698361 cggctaccatgatagtcctcccaggtacccaactttacttaaatcctatatttcccttttgtatt 27698297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 8 - 379
Target Start/End: Complemental strand, 27427573 - 27427208
Alignment:
Q  8 aagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttc 107  Q
    |||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |  |||||||||||  |    
T  27427573 aagcattggctgagcatgaaaataggtttcaaaatgatacgaaaaacatggagaggttgcagcaatggaaagtggctctgagtctggctgctaacttgcc 27427474  T
Q  108 cggctaccatgatagtcctcctaggtactcaacattacttaaatcctatttttcccttttgtattttctttattcaatttcaattgcccaataatctcat 207  Q
    | |||||||||||  |  || | ||||| |    |||||||| |||| |||| |  ||||| ||||  |||||| |||||| ||| | |||||    |||    
T  27427473 cagctaccatgatgatagtcatgggtacgcctatttacttaattcctgttttgct-ttttgcatttaatttatttaatttctattcctcaatac---cat 27427378  T
Q  208 attcaaggttaaatgagatcaaataccttttttatttacgtttttaaa-aagtattagttatttatatgtcacaatagttagaaatgtataatatattct 306  Q
     || |||  |||||| |    || |||||||||||||| ||||||||| || | |||||||||||||||||| |||||||| |||||||||||||||| |    
T  27427377 cttaaagcctaaatgtgt---aacaccttttttatttatgtttttaaacaattgttagttatttatatgtcaaaatagttaaaaatgtataatatattat 27427281  T
Q  307 gagtctacatggatgtgattgtg--acgttgttacatactaacttattttattggacatgaatagatatgaatac 379  Q
    ||||  |||||||||||||||||  | |||||||||||||||||||| |||||||||||||||||||||||||||    
T  27427280 gagt--acatggatgtgattgtgtgatgttgttacatactaacttatattattggacatgaatagatatgaatac 27427208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 27718347 - 27718219
Alignment:
Q  7 gaagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaactttt 106  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  27718347 gaagcattggctgagcatgaaaagaggtttcaaaatgataagaataacatggagaggttgcagcgatggaaagtggctctgagccaggctgctaacttgt 27718248  T
Q  107 ccggctaccatgatagtcctcctaggtac 135  Q
    ||||||||||||||||||||||| |||||    
T  27718247 ccggctaccatgatagtcctcctgggtac 27718219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 27610970 - 27610842
Alignment:
Q  7 gaagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaactttt 106  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||| |||||||    
T  27610970 gaagcattggctgagcatgaaaagaggtttcaaaatgataagaataacatggagaggttgcagggatggaaagtggctctgagccaggctgcaaactttt 27610871  T
Q  107 ccggctaccatgatagtcctcctaggtac 135  Q
    ||||||||||||||||||||||| |||||    
T  27610870 ccggctaccatgatagtcctcctgggtac 27610842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 232 - 379
Target Start/End: Original strand, 28786677 - 28786824
Alignment:
Q  232 accttttttatttacgtttttaaa-aagtatt-agttatttatatgtcacaatagttagaaatgtataatatattctgagtctacatggatgtgattgtg 329  Q
    ||||||| |||||||||||||||| ||||||| | |||||| ||||||| |||||||||||||||||| ||||||||||||  |||||||||||||||||    
T  28786677 accttttctatttacgtttttaaacaagtatttaattatttttatgtcaaaatagttagaaatgtatactatattctgagt--acatggatgtgattgtg 28786774  T
Q  330 acgttgttacatactaacttattttattggacatgaatagatatgaatac 379  Q
    | |||||||||||||||||||| ||||  |||||||||||||||||||||    
T  28786775 atgttgttacatactaacttatcttatatgacatgaatagatatgaatac 28786824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 232 - 379
Target Start/End: Original strand, 28792798 - 28792945
Alignment:
Q  232 accttttttatttacgtttttaaa-aagtatt-agttatttatatgtcacaatagttagaaatgtataatatattctgagtctacatggatgtgattgtg 329  Q
    ||||||| |||||||||||||||| ||||||| | |||||| ||||||| |||||||||||||||||| ||||||||||||  |||||||||||||||||    
T  28792798 accttttctatttacgtttttaaacaagtatttaattatttttatgtcaaaatagttagaaatgtatactatattctgagt--acatggatgtgattgtg 28792895  T
Q  330 acgttgttacatactaacttattttattggacatgaatagatatgaatac 379  Q
    | |||||||||||||||||||| |||| |||||| |||||||||||||||    
T  28792896 atgttgttacatactaacttatcttatcggacattaatagatatgaatac 28792945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 235 - 379
Target Start/End: Original strand, 28781543 - 28781687
Alignment:
Q  235 ttttttatttacgtttttaaa-aagtatt-agttatttatatgtcacaatagttagaaatgtataatatattctgagtctacatggatgtgattgtgacg 332  Q
    |||| |||||||||||||||| || |||| | |||||| ||||||| |||||||||||||||||| ||||||||||||  |||||||||||||||||| |    
T  28781543 ttttctatttacgtttttaaacaattatttaattatttttatgtcaaaatagttagaaatgtatactatattctgagt--acatggatgtgattgtgatg 28781640  T
Q  333 ttgttacatactaacttattttattggacatgaatagatatgaatac 379  Q
    ||||||||||||||||||| ||||  |||||||||||||||||||||    
T  28781641 ttgttacatactaacttatcttatatgacatgaatagatatgaatac 28781687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 26884384 - 26884580
Alignment:
Q  7 gaagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaactttt 106  Q
    ||||||| |||||| |||||||| |||||||||||||||||| | ||||||||||||||||||||||||||| ||||| |||| || | ||||||||| |    
T  26884384 gaagcattggctgaccatgaaaaaaggtttcaaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgt 26884483  T
Q  107 ccggctaccatgatagtcctcctaggtactcaacattacttaaatcctatttttcccttttgtattttctttattcaatttc-aattgcccaataatctc 205  Q
    |||||||||||  |||   || | ||||  | || ||||||||||| |||||| |  |||| |||||||||| || |||||| |||| ||||||||||||    
T  26884484 ccggctaccattttag---tcttgggtatcccactttacttaaatcatattttccttttttatattttctttctttaatttcaaattccccaataatctc 26884580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 7 - 126
Target Start/End: Original strand, 28786497 - 28786616
Alignment:
Q  7 gaagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaactttt 106  Q
    ||||||| ||||| |||||||||||||||||||||||||||| | ||||||||||||||||| | ||||||  ||||||||| ||| ||||||||||| |    
T  28786497 gaagcattggctgggcatgaaaagaggtttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgt 28786596  T
Q  107 ccggctaccatgatagtcct 126  Q
    |||||||||||  |||||||    
T  28786597 ccggctaccattctagtcct 28786616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 7 - 126
Target Start/End: Original strand, 28792618 - 28792737
Alignment:
Q  7 gaagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaactttt 106  Q
    ||||||| ||||| |||||||||||||||||||||||||||| | ||||||||||||||||| | ||||||  ||||||||| ||| ||||||||||| |    
T  28792618 gaagcattggctgggcatgaaaagaggtttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgt 28792717  T
Q  107 ccggctaccatgatagtcct 126  Q
    |||||||||||  |||||||    
T  28792718 ccggctaccattctagtcct 28792737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 7 - 126
Target Start/End: Original strand, 26861832 - 26861951
Alignment:
Q  7 gaagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaactttt 106  Q
    ||||||| |||| |||||||||| |||||||||||||||| | | |||||||||||||||||| |||||||||| ||||||| ||| ||||||||||| |    
T  26861832 gaagcattggctaagcatgaaaaaaggtttcaaaatgatatggataacatggagaggttgcagagatggaaagttgctctgaaccaagctgctaacttgt 26861931  T
Q  107 ccggctaccatgatagtcct 126  Q
    | |||||||||  |||||||    
T  26861932 caggctaccattttagtcct 26861951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 7 - 126
Target Start/End: Original strand, 28781358 - 28781477
Alignment:
Q  7 gaagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaactttt 106  Q
    ||||||| |||||  ||||||||||||||||||||||||||| | ||||||||||||||||| | ||||||  ||||||||| ||| ||||||||||| |    
T  28781358 gaagcattggctggacatgaaaagaggtttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgt 28781457  T
Q  107 ccggctaccatgatagtcct 126  Q
    |||||||||||  |||||||    
T  28781458 ccggctaccattctagtcct 28781477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 258 - 379
Target Start/End: Complemental strand, 27698301 - 27698182
Alignment:
Q  258 gtattagttatttatatgtcacaatagttagaaatgtataatatattctgagtctacatggatgtgattgtgacgttgttacatactaacttattttatt 357  Q
    ||||||||||||||||||||  ||||||||||||| ||||||||||||||||  ||||| ||||||||||||| |||||| ||||||||||| | ||| |    
T  27698301 gtattagttatttatatgtcgaaatagttagaaatttataatatattctgag--tacatagatgtgattgtgatgttgtttcatactaacttttcttact 27698204  T
Q  358 ggacatgaatagatatgaatac 379  Q
     |||| || |||||||||||||    
T  27698203 cgacacgagtagatatgaatac 27698182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 313 - 379
Target Start/End: Complemental strand, 27610782 - 27610716
Alignment:
Q  313 acatggatgtgattgtgacgttgttacatactaacttattttattggacatgaatagatatgaatac 379  Q
    |||||||||||||||||| ||||| |||||||||||||| ||||||| |||||||||||||||||||    
T  27610782 acatggatgtgattgtgatgttgtcacatactaacttatcttattgggcatgaatagatatgaatac 27610716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 379
Target Start/End: Original strand, 26646711 - 26647065
Alignment:
Q  20 agcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccatga 119  Q
    |||| ||| |||| || |||||| | |||||||||| |||  | ||||| | ||||||  ||||||||| ||| ||||||||||| ||||| |||||| |    
T  26646711 agcacgaagagagtttccaaaataacaagaaaaacaaggaacgattgcatcaatggaagttggctctgacccaagctgctaacttgtccggataccatta 26646810  T
Q  120 tagtcctcctaggtactcaacattacttaaatcctatttttcccttttgtattttctttattcaatttcaattgcccaataatctcatattcaaggttaa 219  Q
    |||   |||| ||||| | || ||||||||| | | ||||||| |||| ||||||||||||| |||||   || | ||| |||||||| || ||| ||||    
T  26646811 tag---tcctgggtaccccactttacttaaaccttgtttttcctttttatattttctttatttaattttttttccacaa-aatctcatcttaaagcttaa 26646906  T
Q  220 at-gagatcaaataccttttttatttacgtttttaaa-aagtattagttatttatatgtcacaatagttagaaatgtataatatattctgagtctacatg 317  Q
    || |  | || |||   |||||||| | ||||||||| |||||| | |||||||||||||| || |||||||| |||||||||||||||  |  |||||     
T  26646907 ataggaaacacata---tttttattaatgtttttaaacaagtataaattatttatatgtcaaaagagttagaactgtataatatattctcgg--tacatc 26647001  T
Q  318 gatgtgattgtgacgttgttaca--tactaacttattttattggacatgaatagatatgaatac 379  Q
     ||||  |||||| |||| | ||  ||||||||||| || | ||||||||||||||||||||||    
T  26647002 aatgtatttgtgatgttggtgcatgtactaacttatcttgtgggacatgaatagatatgaatac 26647065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 379
Target Start/End: Original strand, 26752679 - 26753033
Alignment:
Q  20 agcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccatga 119  Q
    |||| ||| |||| || |||||| | |||||||||| |||  | ||||| | ||||||  ||||||||| ||| ||||||||||| ||||| |||||| |    
T  26752679 agcacgaagagagtttccaaaataacaagaaaaacaaggaacgattgcatcaatggaagttggctctgacccaagctgctaacttgtccggataccatta 26752778  T
Q  120 tagtcctcctaggtactcaacattacttaaatcctatttttcccttttgtattttctttattcaatttcaattgcccaataatctcatattcaaggttaa 219  Q
    |||   |||| ||||| | || ||||||||| | | ||||||| |||| ||||||||||||| |||||   || | ||| |||||||| || ||| ||||    
T  26752779 tag---tcctgggtaccccactttacttaaaccttgtttttcctttttatattttctttatttaattttttttccacaa-aatctcatcttaaagcttaa 26752874  T
Q  220 at-gagatcaaataccttttttatttacgtttttaaa-aagtattagttatttatatgtcacaatagttagaaatgtataatatattctgagtctacatg 317  Q
    || |  | || |||   |||||||| | ||||||||| |||||| | |||||||||||||| || |||||||| |||||||||||||||  |  |||||     
T  26752875 ataggaaacacata---tttttattaatgtttttaaacaagtataaattatttatatgtcaaaagagttagaactgtataatatattctcgg--tacatc 26752969  T
Q  318 gatgtgattgtgacgttgttaca--tactaacttattttattggacatgaatagatatgaatac 379  Q
     ||||  |||||| |||| | ||  ||||||||||| || | ||||||||||||||||||||||    
T  26752970 aatgtatttgtgatgttggtgcatgtactaacttatcttgtgggacatgaatagatatgaatac 26753033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 192
Target Start/End: Complemental strand, 27531165 - 27530983
Alignment:
Q  7 gaagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaactttt 106  Q
    |||||||  |||| |||| |||| | |||||||||||||||| | ||||  ||||||||||||| ||||||||  ||||||||||| || |||||||| |    
T  27531165 gaagcattagctgtgcataaaaaaaagtttcaaaatgataaggataacactgagaggttgcagcaatggaaagaagctctgagccaagcggctaacttgt 27531066  T
Q  107 ccggctaccatgatagtcctcctaggtactcaacattacttaaatcctatttttcccttttgtattttctttattcaatttcaatt 192  Q
    | ||| | ||| |||  | |    ||||  | || |||||||||||||||||||||||||| |||||||||| || ||||||||||    
T  27531065 ctggccagcattataaacatg---ggtagcccactttacttaaatcctatttttcccttttatattttctttctttaatttcaatt 27530983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 25538772 - 25538914
Alignment:
Q  20 agcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccatga 119  Q
    |||||||| |||||||||||||| || |||||||||||||| | ||||  | ||||||  | ||||| | ||| ||||||||||| |||||||| ||| |    
T  25538772 agcatgaagagaggtttcaaaataatgagaaaaacatggagcgattgcgtcaatggaagatagctcttatccaagctgctaacttgtccggctatcatta 25538871  T
Q  120 tagtcctcctaggtactcaacattacttaaatcctatttttcc 162  Q
    |||||||| | ||||| | || ||||||||||| | |||||||    
T  25538872 tagtcctcatgggtaccccactttacttaaatcttgtttttcc 25538914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 318 - 379
Target Start/End: Complemental strand, 27718156 - 27718095
Alignment:
Q  318 gatgtgattgtgacgttgttacatactaacttattttattggacatgaatagatatgaatac 379  Q
    ||||||||||||| ||||| |||||||||||||| ||| |||||||||||||||||||||||    
T  27718156 gatgtgattgtgatgttgtcacatactaacttatcttactggacatgaatagatatgaatac 27718095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 25579951 - 25580081
Alignment:
Q  20 agcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccatga 119  Q
    |||||||| |||||||||||||| |  |||||||||||||| | ||||  | ||||||  | ||||| | ||| ||||||||||| |||||||| ||| |    
T  25579951 agcatgaagagaggtttcaaaataacgagaaaaacatggagcgattgcgtcaatggaagatagctcttacccaagctgctaacttgtccggctatcatta 25580050  T
Q  120 tagtcctcctaggtactcaacattacttaaa 150  Q
    |||||||| | ||||| | || |||||||||    
T  25580051 tagtcctcatgggtaccccactttacttaaa 25580081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 26143097 - 26143227
Alignment:
Q  20 agcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccatga 119  Q
    |||||||| |||||||||||||| |  |||||||||||||| | ||||  | ||||||  | ||||| | ||| ||||||||||| |||||||| ||| |    
T  26143097 agcatgaagagaggtttcaaaataacgagaaaaacatggagcgattgcgtcaatggaagatagctcttatccaagctgctaacttgtccggctatcatta 26143196  T
Q  120 tagtcctcctaggtactcaacattacttaaa 150  Q
    |||||||| | ||||| | || |||||||||    
T  26143197 tagtcctcatgggtaccccactttacttaaa 26143227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 27214652 - 27214758
Alignment:
Q  20 agcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccatga 119  Q
    |||||||| |||||||||||||| | ||| ||||||||||| ||||||||  ||||||  | ||||| | ||| ||||||||||| || ||||| ||| |    
T  27214652 agcatgaagagaggtttcaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaaccaagctgctaacttatctggctatcatta 27214751  T
Q  120 tagtcct 126  Q
    |||||||    
T  27214752 tagtcct 27214758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 27234576 - 27234470
Alignment:
Q  20 agcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccatga 119  Q
    |||||||| |||||||||||||| | ||| ||||||||||| ||||||||  ||||||  | ||||| | ||| ||||||||||| || ||||| ||| |    
T  27234576 agcatgaagagaggtttcaaaataacaaggaaaacatggagcggttgcagaaatggaagatagctcttaaccaagctgctaacttatctggctatcatta 27234477  T
Q  120 tagtcct 126  Q
    |||||||    
T  27234476 tagtcct 27234470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 263 - 379
Target Start/End: Original strand, 25539013 - 25539129
Alignment:
Q  263 agttatttatatgtcacaatagttagaaatgtataatatattctgagtctacatggatgtgattgtgacgttg--ttacatactaacttattttattgga 360  Q
    |||||||||||||||| || | |||||| || |||||||||||| | |  |||||||||||||| |||  ||   |||  | ||||||||| ||||||||    
T  25539013 agttatttatatgtcaaaaaaattagaattgcataatatattctcaat--acatggatgtgattttgattttagtttatgttctaacttatcttattgga 25539110  T
Q  361 catgaatagatatgaatac 379  Q
    |||||||||||||||||||    
T  25539111 catgaatagatatgaatac 25539129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 379
Target Start/End: Original strand, 26143338 - 26143454
Alignment:
Q  263 agttatttatatgtcacaatagttagaaatgtataatatattctgagtctacatggatgtgattgtgacgtt-gt-tacatactaacttattttattgga 360  Q
    |||||||||||||||| || |||||||| || |||||||||||| | |  |||||||||||||| |||  || || ||  | |||| |||| ||||||||    
T  26143338 agttatttatatgtcaaaaaagttagaattgcataatatattctcaat--acatggatgtgattttgattttagtgtattttctaatttatcttattgga 26143435  T
Q  361 catgaatagatatgaatac 379  Q
    |||||||||||||||||||    
T  26143436 catgaatagatatgaatac 26143454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 379
Target Start/End: Complemental strand, 27530936 - 27530897
Alignment:
Q  340 atactaacttattttattggacatgaatagatatgaatac 379  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  27530936 atactaacttatcttattggacatgaatagatatgaatac 27530897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 27724813 - 27724775
Alignment:
Q  7 gaagcataggctgagcatgaaaagaggtttcaaaatgat 45  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  27724813 gaagcattggctgagcatgaaaagaggtttcaaaatgat 27724775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 117
Target Start/End: Original strand, 26656221 - 26656318
Alignment:
Q  20 agcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccat 117  Q
    |||||||||||| ||| |||||| | ||| |||||||| |||||||| ||| ||||||  ||||||||| | | ||||| ||||| || |||||||||    
T  26656221 agcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtctggctaccat 26656318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 117
Target Start/End: Original strand, 26762192 - 26762289
Alignment:
Q  20 agcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccat 117  Q
    |||||||||||| ||| |||||| | ||| |||||||| |||||||| ||| ||||||  ||||||||| | | ||||| ||||| || |||||||||    
T  26762192 agcatgaaaagaagttccaaaataacaaggaaaacatgcagaggttggagcaatggaagatggctctgaccaaagctgccaacttgtctggctaccat 26762289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 25506939 - 25506897
Alignment:
Q  20 agcatgaaaagaggtttcaaaatgataagaaaaacatggagag 62  Q
    |||||||| ||| |||||||||| |||||||||||||||||||    
T  25506939 agcatgaagagaagtttcaaaataataagaaaaacatggagag 25506897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 376
Target Start/End: Original strand, 25483609 - 25483642
Alignment:
Q  343 ctaacttattttattggacatgaatagatatgaa 376  Q
    ||||||||| ||||||||||||||||||||||||    
T  25483609 ctaacttatcttattggacatgaatagatatgaa 25483642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 27338020 - 27337923
Alignment:
Q  20 agcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccat 117  Q
    |||||||| | | ||| |||||| | ||| ||||||||||||||||| ||  ||||||  ||||||| | ||| ||||||||||| |||||| |||||    
T  27338020 agcatgaagataagttccaaaataacaaggaaaacatggagaggttgaagaaatggaagatggctcttacccaagctgctaacttctccggccaccat 27337923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 27398760 - 27398663
Alignment:
Q  20 agcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccat 117  Q
    |||||||| | | ||| |||||| | ||| ||||||||||||||||| ||  ||||||  ||||||| | ||| ||||||||||| |||||| |||||    
T  27398760 agcatgaagataagttccaaaataacaaggaaaacatggagaggttgaagaaatggaagatggctcttacccaagctgctaacttctccggccaccat 27398663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 379
Target Start/End: Original strand, 25580272 - 25580308
Alignment:
Q  343 ctaacttattttattggacatgaatagatatgaatac 379  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  25580272 ctaacttatcttattggacacgaatagatatgaatac 25580308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 8 - 379
Target Start/End: Original strand, 59790 - 60155
Alignment:
Q  8 aagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttc 107  Q
    |||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |  |||||||||||  |    
T  59790 aagcattggctgagcatgaaaataggtttcaaaatgatacgaaaaacatggagaggttgcagcaatggaaagtggctctgagtctggctgctaacttgcc 59889  T
Q  108 cggctaccatgatagtcctcctaggtactcaacattacttaaatcctatttttcccttttgtattttctttattcaatttcaattgcccaataatctcat 207  Q
    | |||||||||||  |  || | ||||| |    |||||||| |||| |||| |  ||||| ||||  |||||| |||||| ||| | |||||    |||    
T  59890 cagctaccatgatgatagtcatgggtacgcctatttacttaattcctgttttgct-ttttgcatttaatttatttaatttctattcctcaatac---cat 59985  T
Q  208 attcaaggttaaatgagatcaaataccttttttatttacgtttttaaa-aagtattagttatttatatgtcacaatagttagaaatgtataatatattct 306  Q
     || |||  |||||| |    || |||||||||||||| ||||||||| || | |||||||||||||||||| |||||||| |||||||||||||||| |    
T  59986 cttaaagcctaaatgtgt---aacaccttttttatttatgtttttaaacaattgttagttatttatatgtcaaaatagttaaaaatgtataatatattat 60082  T
Q  307 gagtctacatggatgtgattgtg--acgttgttacatactaacttattttattggacatgaatagatatgaatac 379  Q
    ||||  |||||||||||||||||  | |||||||||||||||||||| |||||||||||||||||||||||||||    
T  60083 gagt--acatggatgtgattgtgtgatgttgttacatactaacttatattattggacatgaatagatatgaatac 60155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 8 - 379
Target Start/End: Original strand, 18073982 - 18074347
Alignment:
Q  8 aagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttc 107  Q
    |||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |  |||||||||||  |    
T  18073982 aagcattggctgagcatgaaaataggtttcaaaatgatacgaaaaacatggagaggttgcagcaatggaaagtggctctgagtctggctgctaacttgcc 18074081  T
Q  108 cggctaccatgatagtcctcctaggtactcaacattacttaaatcctatttttcccttttgtattttctttattcaatttcaattgcccaataatctcat 207  Q
    | |||||||||||  |  || | ||||| |    |||||||| |||| |||| |  ||||| ||||  |||||| |||||| ||| | |||||    |||    
T  18074082 cagctaccatgatgatagtcatgggtacgcctatttacttaattcctgttttgct-ttttgcatttaatttatttaatttctattcctcaatac---cat 18074177  T
Q  208 attcaaggttaaatgagatcaaataccttttttatttacgtttttaaa-aagtattagttatttatatgtcacaatagttagaaatgtataatatattct 306  Q
     || |||  |||||| |    || |||||||||||||| ||||||||| || | |||||||||||||||||| |||||||| |||||||||||||||| |    
T  18074178 cttaaagcctaaatgtgt---aacaccttttttatttatgtttttaaacaattgttagttatttatatgtcaaaatagttaaaaatgtataatatattat 18074274  T
Q  307 gagtctacatggatgtgattgtg--acgttgttacatactaacttattttattggacatgaatagatatgaatac 379  Q
    ||||  |||||||||||||||||  | |||||||||||||||||||| |||||||||||||||||||||||||||    
T  18074275 gagt--acatggatgtgattgtgtgatgttgttacatactaacttatattattggacatgaatagatatgaatac 18074347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 26 - 379
Target Start/End: Complemental strand, 18731440 - 18731096
Alignment:
Q  26 aaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccatgatagtcc 125  Q
    ||||||| || |||||| | ||||||||||||||| ||||||| | ||||||  ||||||||| | | ||||||||||| ||||||||||||  |||||     
T  18731440 aaaagagtttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttggctctgaccgaagctgctaacttgtccggctaccattttagtca 18731341  T
Q  126 tcctaggtactcaacattacttaaatcctatttttcccttttgtattttctttattcaatttcaattgcccaataatctcatattcaaggttaaatgaga 225  Q
    |    |||||||  | |||||||| || | |||| || ||||| ||||| |||||| |||||  ||| | |||||||  ||| || |||  |||||  ||    
T  18731340 tg---ggtactcctctttacttaattcttgtttt-ccattttgcattttatttatttaatttttattcctcaataataccatcttaaagcctaaattgga 18731245  T
Q  226 tcaaataccttttttatttacgtttttaaa-aagtattagttatttatatgtcacaatagttagaaatgtataatatattctgagtctacatggatgtga 324  Q
       || ||||||||| ||||| |||||||| |||||||||||||||||| |||| ||||||||||||||||| ||||||| ||||   ||||||||||||    
T  18731244 ---aacacctttttt-tttacatttttaaacaagtattagttatttataagtcaaaatagttagaaatgtatgatatattatgagg--acatggatgtga 18731151  T
Q  325 ttgtgacgttgttacatactaacttattttattggacatgaatagatatgaatac 379  Q
     ||||| ||||||||||||| |||||| |||||||||||||||||||||||||||    
T  18731150 ctgtgatgttgttacatactgacttatcttattggacatgaatagatatgaatac 18731096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 236 - 379
Target Start/End: Complemental strand, 18723819 - 18723677
Alignment:
Q  236 tttttatttacgtttttaaa-aagtattagttatttatatgtcacaatagttagaaatgtataatatattctgagtctacatggatgtgattgtgacgtt 334  Q
    ||||||||||| |||||||| |||||||||||||||||| |||| ||||||||||||||||| ||||||| |||||  | |||||||||| ||||| |||    
T  18723819 tttttatttacatttttaaacaagtattagttatttataagtcaaaatagttagaaatgtatgatatattatgagt--aaatggatgtgactgtgatgtt 18723722  T
Q  335 gttacatactaacttattttattggacatgaatagatatgaatac 379  Q
    |||||||||| |||||| |||||||||||||||||||||||||||    
T  18723721 gttacatactgacttatcttattggacatgaatagatatgaatac 18723677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 236 - 379
Target Start/End: Complemental strand, 18655211 - 18655069
Alignment:
Q  236 tttttatttacgtttttaaa-aagtattagttatttatatgtcacaatagttagaaatgtataatatattctgagtctacatggatgtgattgtgacgtt 334  Q
    ||||||||||| |||||||| |||||||||||||||||| |||| ||||||||||||||||| ||||||| |||||  | |||||||||| ||||| |||    
T  18655211 tttttatttacatttttaaacaagtattagttatttataagtcaaaatagttagaaatgtatgatatattatgagt--aaatggatgtgactgtgatgtt 18655114  T
Q  335 gttacatactaacttattttattggacatgaatagatatgaatac 379  Q
    |||||| ||| | |||| |||||||||||||||||||||||||||    
T  18655113 gttacacactgatttatcttattggacatgaatagatatgaatac 18655069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 236 - 379
Target Start/End: Complemental strand, 18699134 - 18698992
Alignment:
Q  236 tttttatttacgtttttaaa-aagtattagttatttatatgtcacaatagttagaaatgtataatatattctgagtctacatggatgtgattgtgacgtt 334  Q
    |||||| ||||||||||||| |||||||||||||||||| |||| ||||||||||||||||| ||||| | ||||   |||||||||||| ||||| |||    
T  18699134 tttttaattacgtttttaaacaagtattagttatttataagtcaaaatagttagaaatgtatgatatactatgagg--acatggatgtgactgtgatgtt 18699037  T
Q  335 gttacatactaacttattttattggacatgaatagatatgaatac 379  Q
    |||||| ||| | |||| |||||||||||||||||||||||||||    
T  18699036 gttacacactgatttatcttattggacatgaatagatatgaatac 18698992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 236 - 379
Target Start/End: Complemental strand, 18679301 - 18679152
Alignment:
Q  236 tttttatttacgtttttaaa-aagtattagttatttatatgtcacaatagtt-------agaaatgtataatatattctgagtctacatggatgtgattg 327  Q
    |||||||||||||||||||| |||||||||||||||||| |||| |||||||       |||||||||| ||||||| |||||  |||||| ||||| ||    
T  18679301 tttttatttacgtttttaaacaagtattagttatttataagtcaaaatagtttgaatttagaaatgtatgatatattatgagt--acatgggtgtgactg 18679204  T
Q  328 tgacgttgttacatactaacttattttattggacatgaatagatatgaatac 379  Q
    ||| ||||||||||||| |||||| |||||||||||||||||||||||||||    
T  18679203 tgatgttgttacatactgacttatcttattggacatgaatagatatgaatac 18679152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 18655402 - 18655322
Alignment:
Q  37 caaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccat 117  Q
    |||||| | ||||||||||||||| ||||||| | ||||||  ||||||||| | | ||||||||||| ||||||||||||    
T  18655402 caaaataacaagaaaaacatggagcggttgcatcaatggaagttggctctgaccgaagctgctaacttgtccggctaccat 18655322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 18724010 - 18723930
Alignment:
Q  37 caaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccat 117  Q
    |||||| | ||||||||||||||| ||||||| | ||||||  ||||||||| | | ||||||||||| ||||||||||||    
T  18724010 caaaataacaagaaaaacatggagcggttgcatcaatggaagttggctctgaccgaagctgctaacttgtccggctaccat 18723930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 117
Target Start/End: Complemental strand, 18699335 - 18699245
Alignment:
Q  27 aaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccat 117  Q
    |||||| || |||||| | ||||||||||||||| ||||||| | ||||||  | ||||||| | | ||||||||||| ||||||||||||    
T  18699335 aaagagtttccaaaataacaagaaaaacatggagcggttgcatcaatggaagttagctctgaccgaagctgctaacttgtccggctaccat 18699245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 117
Target Start/End: Complemental strand, 18679502 - 18679412
Alignment:
Q  27 aaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccat 117  Q
    |||||| || |||||| | || |||||||||||| ||||||| | ||||||  | ||||||| | | ||||||||||| ||||||||||||    
T  18679502 aaagagtttccaaaataacaataaaaacatggagcggttgcatcaatggaagttagctctgaccgaagctgctaacttgtccggctaccat 18679412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 98; Significance: 4e-48; HSPs: 4)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 3389 - 3260
Alignment:
Q  7 gaagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaa-catggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttt 105  Q
    ||||||| |||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  3389 gaagcattggctgagcatgaaaagaggtttcaaaatgatccgaaaaaacatggagaggttgcagcgatggaaagtggctctgagccaggctgctaacttg 3290  T
Q  106 tccggctaccatgatagtcctcctaggtac 135  Q
    |||||||||||||||||||||||| |||||    
T  3289 tccggctaccatgatagtcctcctgggtac 3260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 14324 - 14196
Alignment:
Q  7 gaagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaactttt 106  Q
    ||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||| |    
T  14324 gaagcattggctgagcatgaaaagaggtttcaaaatgatccgaaaaacatggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgt 14225  T
Q  107 ccggctaccatgatagtcctcctaggtac 135  Q
    ||||||||||||||||||||||| |||||    
T  14224 ccggctaccatgatagtcctcctgggtac 14196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 318 - 379
Target Start/End: Complemental strand, 3196 - 3135
Alignment:
Q  318 gatgtgattgtgacgttgttacatactaacttattttattggacatgaatagatatgaatac 379  Q
    ||||||||||||| ||||| |||||||||||||| ||| |||||||||||||||||||||||    
T  3196 gatgtgattgtgatgttgtcacatactaacttatcttactggacatgaatagatatgaatac 3135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 366
Target Start/End: Complemental strand, 14135 - 14082
Alignment:
Q  313 acatggatgtgattgtgacgttgttacatactaacttattttattggacatgaa 366  Q
    |||||||||||||||||| ||||| |||||||||||||| ||||||||||||||    
T  14135 acatggatgtgattgtgatgttgtcacatactaacttatcttattggacatgaa 14082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 235 - 379
Target Start/End: Original strand, 7929 - 8073
Alignment:
Q  235 ttttttatttacgtttttaaa-aagtatt-agttatttatatgtcacaatagttagaaatgtataatatattctgagtctacatggatgtgattgtgacg 332  Q
    |||| |||||||||||||||| ||||||| | ||| || ||||||| |||||||||||||||||| ||||||||||||  |||||||||||||||||| |    
T  7929 ttttctatttacgtttttaaacaagtatttaattacttttatgtcaaaatagttagaaatgtatactatattctgagt--acatggatgtgattgtgatg 8026  T
Q  333 ttgttacatactaacttattttattggacatgaatagatatgaatac 379  Q
    ||||||||||||||||||| ||||  |||||||||||||||||||||    
T  8027 ttgttacatactaacttatcttatatgacatgaatagatatgaatac 8073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 7744 - 7854
Alignment:
Q  7 gaagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaactttt 106  Q
    ||||||| |||||  ||||||||||||||||||||||||||||| ||||||||| | ||||| | ||||||  ||||||||| ||| ||||||||||| |    
T  7744 gaagcattggctggacatgaaaagaggtttcaaaatgataagaataacatggagcgattgcatcaatggaagttggctctgacccaagctgctaacttgt 7843  T
Q  107 ccggctaccat 117  Q
    |||||||||||    
T  7844 ccggctaccat 7854  T

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Target: scaffold0277 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 235 - 379
Target Start/End: Complemental strand, 13415 - 13271
Alignment:
Q  235 ttttttatttacgtttttaaa-aagtatt-agttatttatatgtcacaatagttagaaatgtataatatattctgagtctacatggatgtgattgtgacg 332  Q
    |||| |||||||||||||||| ||||||| | ||| || ||||||| |||||||||||||||||| ||||||||||||  |||||||||||||||||| |    
T  13415 ttttctatttacgtttttaaacaagtatttaattacttttatgtcaaaatagttagaaatgtatactatattctgagt--acatggatgtgattgtgatg 13318  T
Q  333 ttgttacatactaacttattttattggacatgaatagatatgaatac 379  Q
    ||||||||||||||||||| ||||  |||||||||||||||||||||    
T  13317 ttgttacatactaacttatcttatatgacatgaatagatatgaatac 13271  T

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Target: scaffold0277; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 232 - 379
Target Start/End: Complemental strand, 4457 - 4308
Alignment:
Q  232 accttttttatttacgtttttaaa-aagtatt-agttatttatatgtcacaatagttagaaatgtata--atatattctgagtctacatggatgtgattg 327  Q
    ||||||| |||||||||||||||| ||||||| | ||| || ||||||||||||||||||||||||||  ||||||| |||||  |||||||||||||||    
T  4457 accttttatatttacgtttttaaacaagtatttaattacttttatgtcacaatagttagaaatgtataccatatattatgagt--acatggatgtgattg 4360  T
Q  328 tgacgttgttacatactaacttattttattggacatgaatagatatgaatac 379  Q
    ||| |||||||||||||||||||| |||| |||||| |||||||||||||||    
T  4359 tgatgttgttacatactaacttatcttatcggacattaatagatatgaatac 4308  T

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Target: scaffold0277; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 7 - 117
Target Start/End: Complemental strand, 4639 - 4529
Alignment:
Q  7 gaagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaactttt 106  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||  ||||||||| ||| ||||||||||| |    
T  4639 gaagcattggctgagcatgaaaagaggtttcaaaatgataagaataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgt 4540  T
Q  107 ccggctaccat 117  Q
    |||||||||||    
T  4539 ccggctaccat 4529  T

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Target: scaffold0277; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 7 - 117
Target Start/End: Complemental strand, 13600 - 13490
Alignment:
Q  7 gaagcataggctgagcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaactttt 106  Q
    ||||||| |||||  ||||||||||||||||||||||||||||| ||||||||| | ||||| | ||||||  ||||||||| ||| ||||||||||| |    
T  13600 gaagcattggctggacatgaaaagaggtttcaaaatgataagaataacatggagcgattgcatcaatggaagttggctctgacccaagctgctaacttgt 13501  T
Q  107 ccggctaccat 117  Q
    |||||||||||    
T  13500 ccggctaccat 13490  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 232 - 379
Target Start/End: Complemental strand, 268094 - 267936
Alignment:
Q  232 accttttttatttacgtttttaaa-aagtattagttatttatatgtcacaatagttagaaatgtataatatattctgagt--ctacatggatgtgat--t 326  Q
    ||||||||||||||||||| |||| ||||||||||| |||||||| |  |||||||||||| |||||||||||| |||||   | ||||||||||||  |    
T  268094 accttttttatttacgtttctaaataagtattagttgtttatatgacgaaatagttagaaacgtataatatattttgagtacatgcatggatgtgattgt 267995  T
Q  327 gtgacgttgttaca------tactaacttattttattggacatgaatagatatgaatac 379  Q
    |||| |||||||||      |||||||||   ||||| |||||||||||||||||||||    
T  267994 gtgatgttgttacatactattactaacttgcattatttgacatgaatagatatgaatac 267936  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 28127621 - 28127516
Alignment:
Q  20 agcatgaaaagaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccatga 119  Q
    |||||| | ||||||| |||||| | ||||||||||||||| | ||||| | ||||||  | ||||| | ||| ||||||||||| |||||||||||| |    
T  28127621 agcatggagagaggttccaaaataacaagaaaaacatggagcgattgcaccaatggaagatagctctaacccaagctgctaacttgtccggctaccatta 28127522  T
Q  120 tagtcc 125  Q
    ||||||    
T  28127521 tagtcc 28127516  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 29 - 125
Target Start/End: Complemental strand, 28164296 - 28164200
Alignment:
Q  29 agaggtttcaaaatgataagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccatgatagtcc 125  Q
    ||||||| |||||| | ||||||||||||||| | ||||| | ||||||  | ||||| | ||| ||||||||||| |||||||||||| |||||||    
T  28164296 agaggttccaaaataacaagaaaaacatggagcgattgcaccaatggaagatagctctaacccaagctgctaacttgtccggctaccattatagtcc 28164200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 117
Target Start/End: Complemental strand, 268273 - 268202
Alignment:
Q  46 aagaaaaacatggagaggttgcagcgatggaaagtggctctgagccatgctgctaacttttccggctaccat 117  Q
    ||||||||||||||| ||||||| | ||||||  ||||||||| ||| ||| ||||||| || |||||||||    
T  268273 aagaaaaacatggagcggttgcatcaatggaagttggctctgacccaagcttctaacttgtctggctaccat 268202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 289
Target Start/End: Complemental strand, 28164100 - 28164048
Alignment:
Q  238 tttatttacgtttttaaa-aagtattagttatttatatgtcacaatagttaga 289  Q
    |||||||| ||||||||| |||||| || ||||||||||||| ||||||||||    
T  28164100 tttatttatgtttttaaacaagtataagatatttatatgtcaaaatagttaga 28164048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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