View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17427_low_10 (Length: 387)
Name: NF17427_low_10
Description: NF17427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17427_low_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 20 - 377
Target Start/End: Original strand, 37008621 - 37008978
Alignment:
| Q |
20 |
atgtagtacaatcttagaattgtttacatacatgtcacaatctaagtttagcataaagggagcatttgtcatcaatccagagactcttgtctgtatacaa |
119 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37008621 |
atgtagtacaatcttagaattgttcacatacatgtcacaatctaagtttagcataaagggagcatttgtcatcaatccagagactcttgtctgtatacaa |
37008720 |
T |
|
| Q |
120 |
tacacattatgagaacttttgaatcgaaattaaggaaacacattgccttattacaatgttgtaatgaaagattaacaattcaaggagttgattgaagaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37008721 |
tacacattatgagaacttttgaatcgaaattaaggaaacacattgccttattacaatgttgtaatgaaagattaacaattcaaggagttgattgaagaaa |
37008820 |
T |
|
| Q |
220 |
tataaatgttaccaagacattcattgcaccagctttgtgatgatgtggttgttttggcctcttctctctagatatgtagattatgtgaggcatcacatca |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37008821 |
tataaatgttaccaagacattcattgcaccagctttgtgatgatgtggttgttttggcctcttctctctagatatgtagattatgtgaggcatcacatca |
37008920 |
T |
|
| Q |
320 |
gaaatacctttgttttctcgaattacctatcaatatatgaagtaaaacatttgatgat |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37008921 |
gaaatacctttgttttctcgaattacctatcaatatatgaagtaaaacatttgatgat |
37008978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 28 - 113
Target Start/End: Original strand, 37025811 - 37025896
Alignment:
| Q |
28 |
caatcttagaattgtttacatacatgtcacaatctaagtttagcataaagggagcatttgtcatcaatccagagactcttgtctgt |
113 |
Q |
| |
|
||||||||| |||||| || | |||||||||||||||||| | || || |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37025811 |
caatcttaggattgttcacgtgcatgtcacaatctaagttcaatatgaaaggagcatttgtcatcattccagagactcttgtctgt |
37025896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 37044809 - 37044892
Alignment:
| Q |
29 |
aatcttagaattgtttacatacatgtcacaatctaagtttagcataaagggagcatttgtcatcaatccagagactcttgtctg |
112 |
Q |
| |
|
|||||| | |||||| ||| ||||||||| |||| ||| | |||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
37044809 |
aatcttgggattgttcacaaccatgtcacagtctacgttcaacataaaaggagcattggtcatcaatccagagactcttgtctg |
37044892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 311
Target Start/End: Original strand, 37035762 - 37035801
Alignment:
| Q |
272 |
tttggcctcttctctctagatatgtagattatgtgaggca |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37035762 |
tttggcctcttctctctagatatgtagattaagtgaggca |
37035801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 311
Target Start/End: Original strand, 37026237 - 37026267
Alignment:
| Q |
281 |
ttctctctagatatgtagattatgtgaggca |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
37026237 |
ttctctctagatatgtagattatgtgaggca |
37026267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 17657564 - 17657492
Alignment:
| Q |
228 |
ttaccaagacattcattgcaccagctttgtgatgatgtggttgttttggcctcttctctctagatatgtagat |
300 |
Q |
| |
|
||||||| |||||||| ||||| |||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17657564 |
ttaccaacacattcatggcaccggctttgaaatgatgtggttgctttggcctcttctctctagatatgtagat |
17657492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 17657721 - 17657647
Alignment:
| Q |
38 |
attgtttacatacatgtcacaatctaagtttagcataaagggagcatttgtcatcaatccagagactcttgtctg |
112 |
Q |
| |
|
|||||||||| ||||||||||||| | ||| | ||| ||||| ||||| || ||||| ||||||||||||||||| |
|
|
| T |
17657721 |
attgtttacaaacatgtcacaatccacgttcaacatgaagggtgcattggtaatcaacccagagactcttgtctg |
17657647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University