View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17427_low_13 (Length: 359)
Name: NF17427_low_13
Description: NF17427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17427_low_13 |
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| [»] scaffold1485 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 10 - 343
Target Start/End: Complemental strand, 4855055 - 4854725
Alignment:
| Q |
10 |
gcataggctgtgtttgataaccgtcttttcttcacaagcttataatttgtaacccttctttcaacnnnnnnnnnnnnnnncttgtaaccctttttggtaa |
109 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||| |||| |
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| T |
4855055 |
gcataggctgtgtttgataaccgtcttttcttcgcaagcttataatttgtatcccttctttcaa---aaaaaaaaaaaaacttgtaaccctttttagtaa |
4854959 |
T |
|
| Q |
110 |
ccccttatatgtttatctaaaaaccaattttaccctttgaagtttattatcatttaataaaatagttcaatgttacgtttatattttcaccttgctcgtt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4854958 |
ccccttatatgtttatctaaaaaccaattttaccctttgaagtttattatcatttaataaaatagttcaatgttacgtttatattttcaccttgctcgtt |
4854859 |
T |
|
| Q |
210 |
atttttgtacttgatgggtttaaaattgtcattatatagatggttgattctcctttagaaaaggatcagggtcctcttttttcaattctcttttgctgtg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||| |
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| T |
4854858 |
atttttgtacttgatgggtttaaaattgtcattatatagatggttgattctcctttagaaaaggatcaagatcctcttttttcgattctcttttgctgtg |
4854759 |
T |
|
| Q |
310 |
ttctgcactaatatcacccgtccatccaatctct |
343 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
4854758 |
ttctgcactaatatcacccgtccatccaatctct |
4854725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 10 - 343
Target Start/End: Complemental strand, 4876790 - 4876460
Alignment:
| Q |
10 |
gcataggctgtgtttgataaccgtcttttcttcacaagcttataatttgtaacccttctttcaacnnnnnnnnnnnnnnncttgtaaccctttttggtaa |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||| |||| |
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| T |
4876790 |
gcataggctgtgtttgataaccgtcttttcttcgcaagcttataatttgtatcccttctttcaa---aaaaaaaaaaaaacttgtaaccctttttagtaa |
4876694 |
T |
|
| Q |
110 |
ccccttatatgtttatctaaaaaccaattttaccctttgaagtttattatcatttaataaaatagttcaatgttacgtttatattttcaccttgctcgtt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4876693 |
ccccttatatgtttatctaaaaaccaattttaccctttgaagtttattatcatttaataaaatagttcaatgttacgtttatattttcaccttgctcgtt |
4876594 |
T |
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| Q |
210 |
atttttgtacttgatgggtttaaaattgtcattatatagatggttgattctcctttagaaaaggatcagggtcctcttttttcaattctcttttgctgtg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||| |
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| T |
4876593 |
atttttgtacttgatgggtttaaaattgtcattatatagatggttgattctcctttagaaaaggatcaagatcctcttttttcgattctcttttgctgtg |
4876494 |
T |
|
| Q |
310 |
ttctgcactaatatcacccgtccatccaatctct |
343 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
4876493 |
ttctgcactaatatcacccgtccatccaatctct |
4876460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 12 - 343
Target Start/End: Complemental strand, 4873056 - 4872728
Alignment:
| Q |
12 |
ataggctgtgtttgataaccgtcttttcttcacaagcttataatttgtaacccttctttcaacnnnnnnnnnnnnnnn-cttgtaaccctttttggtaac |
110 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| | ||||| |
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| T |
4873056 |
ataggttgtgtttgataaccgtcttttcttcacaagcttataacttgtaacccttctttcaaaaaaaaaaaaaaaacaacttgtaaccttatttgg---- |
4872961 |
T |
|
| Q |
111 |
cccttatatgtttatctaaaaaccaattttaccctttgaagtttattatcatttaataaaatagttcaatgttacgtttatattttcaccttgctcgtta |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
4872960 |
--cttatatgtttatctaaaaaccaattttaccctttgaagtttattataatttaataacatagttcaatgttacgtttatattttcaccttgatcgtta |
4872863 |
T |
|
| Q |
211 |
tttttgtacttgatgggtttaaaattgtcattatatagatggttgattctcctttagaaaaggatcagggtcctcttttttcaattctcttttgc--tgt |
308 |
Q |
| |
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||||||||| ||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||| || |||||||||||| |||||||||||| ||| |
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| T |
4872862 |
tttttgtacatgatgggtttaaatttgtcgttatatagatggttgattgtcctttagaaaaggatcgggatcctcttttttcgattctcttttgctatgt |
4872763 |
T |
|
| Q |
309 |
gttctgcactaatatcacccgtccatccaatctct |
343 |
Q |
| |
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||||||||||||||| || |||||||||||||||| |
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| T |
4872762 |
gttctgcactaatattactcgtccatccaatctct |
4872728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 90 - 327
Target Start/End: Complemental strand, 4850962 - 4850724
Alignment:
| Q |
90 |
cttgtaaccctttttggtaaccccttatatgtttatctaaaaaccaattttaccctttgaagtttattatcatttaataaaatagttcaatgttacgttt |
189 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||| |
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| T |
4850962 |
cttgtaaccctatttggtaaccccttatatgtttatctaaaaaccaattttaccctttgaagtttattataatttaataaaattgttcaatgttccgttt |
4850863 |
T |
|
| Q |
190 |
ata-ttttcaccttgctcgttatttttgtacttgatgggtttaaaattgtcattatatagatggttgattctcctttagaaaaggatcagggtcctcttt |
288 |
Q |
| |
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||| |||| |||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| || || ||||| |
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| T |
4850862 |
atattttttaccttgatcgtt-tttttgtacttgatgggtttaaatttgtcgttatatagatggttgattctcctttagaaaaggatcgggatcttcttt |
4850764 |
T |
|
| Q |
289 |
tttcaattctcttttgc--tgtgttctgcactaatatcacc |
327 |
Q |
| |
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|||| |||||||||||| |||||||||||||||||||||| |
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| T |
4850763 |
tttc-attctcttttgctatgtgttctgcactaatatcacc |
4850724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 117 - 286
Target Start/End: Complemental strand, 4834029 - 4833858
Alignment:
| Q |
117 |
tatgtttatctaaaaaccaattttaccctttgaagtttattatcatttaataaaatagttcaatgttacgtttatattttcaccttgctcgttatttttg |
216 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||| | |||||||||| || || |||||||||||| |
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| T |
4834029 |
tatgattatctaaaaaccaattttaccctttgaagtttattataatttcataaaacagttcaatgtttcatttatatttttactttagtcgttatttttg |
4833930 |
T |
|
| Q |
217 |
tacttgatgggtttaaaattgtcatta--tatagatggttgattctcctttagaaaaggatcagggtcctct |
286 |
Q |
| |
|
||| || |||||| || |||| ||| |||||||||||||||||||||||||||||||| || |||||| |
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|
| T |
4833929 |
tacccgaagggttttaatttgttgttagcgatagatggttgattctcctttagaaaaggatctggatcctct |
4833858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1485 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: scaffold1485
Description:
Target: scaffold1485; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 90 - 343
Target Start/End: Original strand, 15 - 268
Alignment:
| Q |
90 |
cttgtaaccctttttggtaaccccttatatgtttatctaaaaaccaattttaccctttgaagtttattatcatttaataaaatagttcaatgttacgttt |
189 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15 |
cttgtaaccctttttagtaaccccttatatgtttatctaaaaaccaattttaccctttgaagtttattatcatttaataaaatagttcaatgttacgttt |
114 |
T |
|
| Q |
190 |
atattttcaccttgctcgttatttttgtacttgatgggtttaaaattgtcattatatagatggttgattctcctttagaaaaggatcagggtcctctttt |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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|
| T |
115 |
atattttcaccttgctcgttatttttgtacttgatgggtttaaaattgtcattatatagatggttgattctcctttagaaaaggatcaagatcctctttt |
214 |
T |
|
| Q |
290 |
ttcaattctcttttgctgtgttctgcactaatatcacccgtccatccaatctct |
343 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
215 |
ttcgattctcttttgctgtgttctgcactaatatcacccgtccatccaatctct |
268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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