View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17427_low_14 (Length: 337)
Name: NF17427_low_14
Description: NF17427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17427_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 5 - 321
Target Start/End: Complemental strand, 21607860 - 21607544
Alignment:
| Q |
5 |
gttcaaacatatggtttctacgtaactagtgtcgttatcgtattttggcttactttttgacctaaatccatgtccagcaaagtnnnnnnncaaggtatca |
104 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
21607860 |
gttcaaacatatggcttctacataactagtgtcgttatcgtattttggcttactctttgacctaaatccatgtccagcaaagtaaaaaaacaaggtatca |
21607761 |
T |
|
| Q |
105 |
cccgctttaaggttcttaaacaaatccaacaacagtgtcaaaagggttgcgtgggtgacaacacttggttttatttcaaaataattttttggaggagaag |
204 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
21607760 |
cccgctttaaggttcttaaacaaatccagcaacaatgtcaaaagggttgcgtgggtgacaacacttgattttatttcaaaataattttttgaaggagaag |
21607661 |
T |
|
| Q |
205 |
ccatcgacggatattcatctatgagaagggttatgtcctcagacttaaacccaaaatgctttatcaacaagtccttgactcaaacggcggaatttacaag |
304 |
Q |
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||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
21607660 |
ccatcgacggatattcatctatgagaaggattatatcctcagacttaaacccaaaacactttatcaacaagtccttgactcaaacggctgaatttacaag |
21607561 |
T |
|
| Q |
305 |
tcctctaaggtaattaa |
321 |
Q |
| |
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||||||||||||||| |
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| T |
21607560 |
cactctaaggtaattaa |
21607544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 5 - 321
Target Start/End: Original strand, 21608788 - 21609103
Alignment:
| Q |
5 |
gttcaaacatatggtttctacgtaactagtgtcgttatcgtattttggcttactttttgacctaaatccatgtccagcaaagtnnnnnnncaaggtatca |
104 |
Q |
| |
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|||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
21608788 |
gttcaaacatatggcttctacgtaactagtatcgttatcgtattttggcttactctttgacctaaatccatgtccagcaaagtaaaaaaacaaggtatcc |
21608887 |
T |
|
| Q |
105 |
cccgctttaaggttcttaaacaaatccaacaacagtgtcaaaagggttgcgtgggtgacaacacttggttttatttcaaaataattttttggaggagaag |
204 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| || |
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| T |
21608888 |
cccgctttaaggttcttaaacaaatccagcaacaatgtcaaaagggttgcgtgggtgacaacacttg-ttttatttcaaaattattttttggaggacaaa |
21608986 |
T |
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| Q |
205 |
ccatcgacggatattcatctatgagaagggttatgtcctcagacttaaacccaaaatgctttatcaacaagtccttgactcaaacggcggaatttacaag |
304 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| || |||||||| | | |
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| T |
21608987 |
ccatcgacggatattcatctatgagaagggttatgtcctcaggcttaaaccaaaaatgctttatcaacaagtccttgactagaaaagcggaattgataga |
21609086 |
T |
|
| Q |
305 |
tcctctaaggtaattaa |
321 |
Q |
| |
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||||||||||||||||| |
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| T |
21609087 |
tcctctaaggtaattaa |
21609103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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