View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17427_low_15 (Length: 326)

Name: NF17427_low_15
Description: NF17427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17427_low_15
NF17427_low_15
[»] chr3 (20 HSPs)
chr3 (1-307)||(22621442-22621748)
chr3 (1-270)||(22104361-22104624)
chr3 (1-240)||(22179055-22179294)
chr3 (1-287)||(30989853-30990121)
chr3 (13-307)||(22657594-22657888)
chr3 (1-224)||(21936791-21937014)
chr3 (1-240)||(22052384-22052610)
chr3 (140-249)||(22615827-22615936)
chr3 (1-307)||(22648686-22648993)
chr3 (140-307)||(21945401-21945562)
chr3 (1-125)||(22186638-22186762)
chr3 (1-125)||(22010472-22010596)
chr3 (140-240)||(22034294-22034394)
chr3 (140-240)||(22114862-22114962)
chr3 (1-77)||(22034167-22034243)
chr3 (2-119)||(21945275-21945392)
chr3 (1-77)||(22114030-22114106)
chr3 (1-53)||(3304355-3304407)
chr3 (140-240)||(18967574-18967674)
chr3 (40-80)||(18967722-18967762)
[»] chr1 (4 HSPs)
chr1 (40-246)||(34979846-34980052)
chr1 (141-246)||(34989004-34989109)
chr1 (40-80)||(34975188-34975228)
chr1 (40-80)||(34988903-34988943)
[»] chr7 (2 HSPs)
chr7 (140-240)||(873151-873251)
chr7 (140-240)||(1234428-1234528)
[»] chr8 (1 HSPs)
chr8 (115-240)||(27294344-27294472)


Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 22621748 - 22621442
Alignment:
Q  1 ggagtcaaaacatgggtgaaacaagttagagaaacaacctttcgcatagaagacatcattgatgattatatgatccatgtgagacaacatcctcgtaatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  22621748 ggagtcaaaacatgggtgaaacaagttagagaaacaacctttcgcatagaagacatcattgatgattatatgatccatgtgagacaacagcctcgtaatc 22621649  T
Q  101 ttgggtgtatggctttactccataatattagtcacttagtcaaaactatgatccctcgccatcgaatagcgtccaagattcaaggcattaagtcatctgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22621648 ttgggtgtatggctttactccataatattagtcacttagtcaaaactatgatccctcgccatcgaatagcgtccaagattcaaggcattaagtcatctgt 22621549  T
Q  201 gcatgggatcaaggaaagaagtgaaaggtatggcttccaaatccaaccttctattgaacaaggatcaagccactttagaggaagccaaaaggcgaaatgg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22621548 gcatgggatcaaggaaagaagtgaaaggtatggcttccaaatccaaccttctattgaacaaggatcaagccactttagaggaagccaaaaggcgaaatgg 22621449  T
Q  301 catgacc 307  Q
    |||||||    
T  22621448 catgacc 22621442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 22104361 - 22104624
Alignment:
Q  1 ggagtcaaaacatgggtgaaacaagttagagaaacaacctttcgcatagaagacatcattgatgattatatgatccatgtgagacaacatcctcgtaatc 100  Q
    |||||||||||||||||||| ||| |||| | | || | |||||||||||||| ||||||||||| ||||||||||||||  |||| || |||||| |||    
T  22104361 ggagtcaaaacatgggtgaagcaacttagggtagcagcttttcgcatagaagatatcattgatgagtatatgatccatgtaggacagcagcctcgtgatc 22104460  T
Q  101 ttgggtgtatggctttactccataatattagtcacttagtcaaaactatgatccctcgccatcgaatagcgtccaagattcaaggcattaagtcatctgt 200  Q
     ||| ||| | ||| ||||  |||| |||  ||||||| |||||||||||| ||||||||||||||||||  |  |||||||||   |||||||||||||    
T  22104461 ctggatgtgtagctatacttgataagattgctcacttactcaaaactatgacccctcgccatcgaatagcagctgagattcaagatgttaagtcatctgt 22104560  T
Q  201 gcatgggatcaaggaaagaagtgaaaggtatggcttccaaatccaaccttctattgaacaaggatcaagc 270  Q
     | |||||||||||||||||||||| | |||||||      ||||||||||| |||||||||||||||||    
T  22104561 tcgtgggatcaaggaaagaagtgaacgatatggct------tccaaccttcttttgaacaaggatcaagc 22104624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 22179055 - 22179294
Alignment:
Q  1 ggagtcaaaacatgggtgaaacaagttagagaaacaacctttcgcatagaagacatcattgatgattatatgatccatgtgagacaacatcctcgtaatc 100  Q
    |||||||||||||||||||| ||| |||| | | || | |||||||||||||| ||||||||||||||| ||||||||||  ||||||| |||||| |||    
T  22179055 ggagtcaaaacatgggtgaagcaacttagggtagcagcttttcgcatagaagatatcattgatgattatttgatccatgttggacaacaacctcgtgatc 22179154  T
Q  101 ttgggtgtatggctttactccataatattagtcacttagtcaaaactatgatccctcgccatcgaatagcgtccaagattcaaggcattaagtcatctgt 200  Q
     ||| ||| | ||| || |  |||| |||| ||||||| ||||||| |||| || |||||||||||||||  |  ||||||||| |||||||||||||||    
T  22179155 ctggatgtgtagctgtatttgataagattactcacttactcaaaaccatgacccgtcgccatcgaatagcagctgagattcaagacattaagtcatctgt 22179254  T
Q  201 gcatgggatcaaggaaagaagtgaaaggtatggcttccaa 240  Q
     | | ||||||||||||||||||| |  ||||||||||||    
T  22179255 tcgtaggatcaaggaaagaagtgataaatatggcttccaa 22179294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 30990121 - 30989853
Alignment:
Q  1 ggagtcaaaacatgggtgaaacaagttagagaaacaacctttcgcatagaagacatcattgatgattatatgatccatgtgagacaacatcctcgtaatc 100  Q
    |||||||||||||||||||| || ||||| ||| || | |||||||||||||| ||||| ||||||||| |||||||||||||||||||||||| | |||    
T  30990121 ggagtcaaaacatgggtgaagcaggttagggaagcagcttttcgcatagaagatatcatcgatgattatttgatccatgtgagacaacatcctcatgatc 30990022  T
Q  101 ttgggtgtatggctttactccataatattagtcacttagtcaaaactatgatccctcgccatcgaatagcgtccaagattcaaggcattaagtcatctgt 200  Q
     ||| ||| |  |||||||||| || |||            |||||| |||||||||| | ||||||||| ||  ||||||||| ||||||||| |||||    
T  30990021 ctggatgtgtatctttactccacaagatt------------aaaactgtgatccctcgtcgtcgaatagcatctgagattcaagacattaagtcgtctgt 30989934  T
Q  201 gcatgggatcaaggaaagaagtgaaaggtatggcttccaaatccaaccttctattgaacaaggatcaagccactttagaggaagcca 287  Q
     | || ||||||||||||||||||||| |||||||      |||||| |||| ||||||||||||||||| | | ||||||||||||    
T  30989933 tcgtgagatcaaggaaagaagtgaaagatatggct------tccaacgttcttttgaacaaggatcaagcaattctagaggaagcca 30989853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 22657888 - 22657594
Alignment:
Q  13 tgggtgaaacaagttagagaaacaacctttcgcatagaagacatcattgatgattatatgatccatgtgagacaacatcctcgtaatcttgggtgtatgg 112  Q
    |||||||| || ||||| |||| | | ||||||||||||||  |||||||||||||||||||||||||| | || || |||||| ||    | ||  |      
T  22657888 tgggtgaagcaggttagggaaatagcttttcgcatagaagatgtcattgatgattatatgatccatgtggggcagcaacctcgtgattcccgatgcgttt 22657789  T
Q  113 ctttactccataatattagtcacttagtcaaaactatgatccctcgccatcgaatagcgtccaagattcaaggcattaagtcatctgtgcatgggatcaa 212  Q
    || |||||||| |||||  ||||||  ||||||||||||   |||||| || |||||||| |||||||||||  |||||||||| |||   |||||||||    
T  22657788 ctctactccatgatattcctcacttgctcaaaactatgaattctcgccgtcaaatagcgttcaagattcaagagattaagtcatttgtttgtgggatcaa 22657689  T
Q  213 ggaaagaagtgaaaggtatggcttccaaatccaaccttctattgaacaaggatcaagccactttagaggaagccaaaaggcgaaatggcatgacc 307  Q
     |||||||||||||| ||||| ||||||||||||||||||  | |||||||||| |    |||||||||||||||||  || |||||||||||||    
T  22657688 agaaagaagtgaaagatatggtttccaaatccaaccttcttctcaacaaggatctacaagctttagaggaagccaaactgccaaatggcatgacc 22657594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 21936791 - 21937014
Alignment:
Q  1 ggagtcaaaacatgggtgaaacaagttagagaaacaacctttcgcatagaagacatcattgatgattatatgatccatgtgagacaacatcctcgtaatc 100  Q
    ||||| ||||| |||||||| ||  |||| ||| || | ||| |||||||||| ||||||||||| ||||||||||||||  ||||  | |||| |  ||    
T  21936791 ggagttaaaacttgggtgaagcagcttagggaagcagctttttgcatagaagatatcattgatgaatatatgatccatgtaggacagaagcctcatggtc 21936890  T
Q  101 ttgggtgtatggctttactccataatattagtcacttagtcaaaactatgatccctcgccatcgaatagcgtccaagattcaaggcattaagtcatctgt 200  Q
     ||| ||| | |||||||| |||||||||  ||||||| ||| ||| |||| | ||||||||||||||||  |  ||||||||| |||||||||||||||    
T  21936891 atggatgtgtagctttacttcataatatttctcacttactcagaaccatgacctctcgccatcgaatagcagctgagattcaagacattaagtcatctgt 21936990  T
Q  201 gcatgggatcaaggaaagaagtga 224  Q
     | |||||||||||||||||||||    
T  21936991 tcgtgggatcaaggaaagaagtga 21937014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 22052384 - 22052610
Alignment:
Q  1 ggagtcaaaacatgggtgaaacaagttagagaaacaacctttcgcatagaagacatcattgatgattatatgatccatgtgagacaacatcctcgtaatc 100  Q
    |||||||||| ||||||||| ||| |||| ||  || | |||||||||||||| ||||||||||||||| ||||||| ||  ||||||| |||||  |||    
T  22052384 ggagtcaaaatatgggtgaagcaacttagggaggcagcttttcgcatagaagatatcattgatgattatttgatccaggtaggacaacaacctcgctatc 22052483  T
Q  101 ttgggtgtatggctttactccataatattagtcacttagtcaaaactatgatccctcgccatcgaatagcgtccaagattcaaggcattaagtcatctgt 200  Q
     ||| ||||| |||||||| |||||              |||||||||||| |||||| | ||||||||| || ||||||||||   ||||| |||||||    
T  22052484 ctggatgtatagctttacttcataa------------gctcaaaactatga-ccctcgtcgtcgaatagcatctaagattcaagatcttaagacatctgt 22052570  T
Q  201 gcatgggatcaaggaaagaagtgaaaggtatggcttccaa 240  Q
     ||||||||||  |||||||||||||| ||||||||||||    
T  22052571 tcatgggatcacagaaagaagtgaaagatatggcttccaa 22052610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 140 - 249
Target Start/End: Complemental strand, 22615936 - 22615827
Alignment:
Q  140 tcaaaactatgatccctcgccatcgaatagcgtccaagattcaaggcattaagtcatctgtgcatgggatcaaggaaagaagtgaaaggtatggcttcca 239  Q
    |||||||| ||||||||||||||||||| | ||| ||||||||||   ||||||| |||||   |  ||||||||||||||||||||| |||||||||||    
T  22615936 tcaaaactttgatccctcgccatcgaattgggtcaaagattcaagaagttaagtcgtctgtttgtatgatcaaggaaagaagtgaaagatatggcttcca 22615837  T
Q  240 aatccaacct 249  Q
    ||||||||||    
T  22615836 aatccaacct 22615827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 22648993 - 22648686
Alignment:
Q  1 ggagtcaaaacatgggtgaaacaagttagagaaacaacctttcgcatagaa-gacatcattgatgattatatgatccatgtgagacaacatcctcgtaat 99  Q
    ||||||||| | |||||||| ||| |||||||| || | || ||||||||| || ||||||||||||||||||||| || ||  ||| || |||||| ||    
T  22648993 ggagtcaaatcgtgggtgaagcaacttagagaagcagctttccgcatagaaagatatcattgatgattatatgatctatatggaacagcagcctcgtgat 22648894  T
Q  100 cttgggtgtatggctttactccataatattagtcacttagtcaaaactatgatccctcgccatcgaatagcgtccaagattcaaggcattaagtcatctg 199  Q
    || || ||| | |||||||||||||| |||  | ||||| ||||||| ||||    |||||||| ||| || ||| ||||||||| |||||||| || |     
T  22648893 ctcggatgtctagctttactccataagattgcttacttactcaaaacaatgaaagatcgccatcaaattgcatccgagattcaagacattaagttattta 22648794  T
Q  200 tgcatgggatcaaggaaagaagtgaaaggtatggcttccaaatccaaccttctattgaacaaggatcaagccactttagaggaagccaaaaggcgaaatg 299  Q
    | | ||| |||||||||| |||  | || ||||  |||||||||   ||||||| |||||||| ||||||   ||| |||  ||||||||| |  |||||    
T  22648793 ttcgtggaatcaaggaaaaaagccacagatatgagttccaaatcttgccttctaatgaacaagaatcaagaagcttcagaaaaagccaaaatgttaaatg 22648694  T
Q  300 gcatgacc 307  Q
    ||||||||    
T  22648693 gcatgacc 22648686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 307
Target Start/End: Original strand, 21945401 - 21945562
Alignment:
Q  140 tcaaaactatgatccctcgccatcgaatagcgtccaagattcaaggcattaagtcatctgtgcatgggatcaaggaaagaagtgaaaggtatggcttcca 239  Q
    ||||||||||||||||||| | ||||||||| ||  |||||||||   ||||||||| ||| | |||||||||||||||||||| ||  |||||||        
T  21945401 tcaaaactatgatccctcgtcgtcgaatagcatctgagattcaagatgttaagtcatatgttcgtgggatcaaggaaagaagtggaacatatggct---- 21945496  T
Q  240 aatccaaccttctattgaacaaggatcaagccactttagaggaagccaaaaggcgaaatggcatgacc 307  Q
      | |||| |||| |||||||||||||||||  || ||| |||||||| || || |||||||| ||||    
T  21945497 --ttcaacgttcttttgaacaaggatcaagcagctctaggggaagccagaatgccaaatggcacgacc 21945562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 22186638 - 22186762
Alignment:
Q  1 ggagtcaaaacatgggtgaaacaagttagagaaacaacctttcgcatagaagacatcattgatgattatatgatccatgtgagacaacatcctcgtaatc 100  Q
    |||||||||| ||||||||| ||| |||| ||| || | |||| ||||||||| ||||||||||||||| ||||||| ||  ||||||| |||||  |||    
T  22186638 ggagtcaaaatatgggtgaagcaacttagggaagcagcttttcacatagaagatatcattgatgattatttgatccaggtacgacaacaacctcgagatc 22186737  T
Q  101 ttgggtgtatggctttactccataa 125  Q
     ||| ||||| |||||||| |||||    
T  22186738 ctggatgtatagctttacttcataa 22186762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 22010472 - 22010596
Alignment:
Q  1 ggagtcaaaacatgggtgaaacaagttagagaaacaacctttcgcatagaagacatcattgatgattatatgatccatgtgagacaacatcctcgtaatc 100  Q
    |||||||||| ||||||||| ||| |||| ||| || | |||| ||||||||| ||||||||||||||| ||||||| ||  ||||||| ||| |  |||    
T  22010472 ggagtcaaaatatgggtgaagcaacttagggaagcagcttttcacatagaagatatcattgatgattatttgatccaggtacgacaacaaccttgagatc 22010571  T
Q  101 ttgggtgtatggctttactccataa 125  Q
     ||| ||||| |||||||| |||||    
T  22010572 ctggatgtatagctttacttcataa 22010596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 240
Target Start/End: Original strand, 22034294 - 22034394
Alignment:
Q  140 tcaaaactatgatccctcgccatcgaatagcgtccaagattcaaggcattaagtcatctgtgcatgggatcaaggaaagaagtgaaaggtatggcttcca 239  Q
    ||||||||||||||||||| | ||||||||| ||  |||| ||||   ||||| ||||||| | ||||||||  |||||||||||||| |||||||||||    
T  22034294 tcaaaactatgatccctcgtcgtcgaatagcatctgagatacaagatgttaagacatctgttcgtgggatcacagaaagaagtgaaagatatggcttcca 22034393  T
Q  240 a 240  Q
    |    
T  22034394 a 22034394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 240
Target Start/End: Original strand, 22114862 - 22114962
Alignment:
Q  140 tcaaaactatgatccctcgccatcgaatagcgtccaagattcaaggcattaagtcatctgtgcatgggatcaaggaaagaagtgaaaggtatggcttcca 239  Q
    ||||||||||||||||||| | ||||||||| ||  |||| ||||   ||||| ||||||| | ||||||||  |||||||||||||| |||||||||||    
T  22114862 tcaaaactatgatccctcgtcgtcgaatagcatctgagatacaagattttaagacatctgttcgtgggatcacagaaagaagtgaaagatatggcttcca 22114961  T
Q  240 a 240  Q
    |    
T  22114962 a 22114962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 22034167 - 22034243
Alignment:
Q  1 ggagtcaaaacatgggtgaaacaagttagagaaacaacctttcgcatagaagacatcattgatgattatatgatcca 77  Q
    |||||||||| ||||||||| ||| |||| ||  || | |||||||||||||| ||||||||||||||| |||||||    
T  22034167 ggagtcaaaatatgggtgaagcaacttagggaggcagcttttcgcatagaagatatcattgatgattatttgatcca 22034243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 119
Target Start/End: Original strand, 21945275 - 21945392
Alignment:
Q  2 gagtcaaaacatgggtgaaacaagttagagaaacaacctttcgcatagaagacatcattgatgattatatgatccatgtgagacaacatcctcgtaatct 101  Q
    ||||||||| ||||||||| ||| |||| |   || | |||||||||||||| ||||||||||||||| ||||||| ||  ||||||  |||||  |||     
T  21945275 gagtcaaaatatgggtgaagcaacttagggtggcagcttttcgcatagaagatatcattgatgattatttgatccaggtaggacaacgacctcgctatcc 21945374  T
Q  102 tgggtgtatggctttact 119  Q
    ||| ||||| ||||||||    
T  21945375 tggatgtatagctttact 21945392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 22114030 - 22114106
Alignment:
Q  1 ggagtcaaaacatgggtgaaacaagttagagaaacaacctttcgcatagaagacatcattgatgattatatgatcca 77  Q
    |||||||||| ||||||||| ||| |||| ||  || | |||| ||||||||| ||||||||||||||| |||||||    
T  22114030 ggagtcaaaatatgggtgaagcaacttagggaggcagcttttcacatagaagatatcattgatgattatttgatcca 22114106  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 3304407 - 3304355
Alignment:
Q  1 ggagtcaaaacatgggtgaaacaagttagagaaacaacctttcgcatagaaga 53  Q
    |||||||||||||||||||| ||||| ||||||  | | ||||||||||||||    
T  3304407 ggagtcaaaacatgggtgaagcaagtaagagaagtatcttttcgcatagaaga 3304355  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 240
Target Start/End: Complemental strand, 18967674 - 18967574
Alignment:
Q  140 tcaaaactatgatccctcgccatcgaatagcgtccaagattcaaggcattaagtcatctgtgcatgggatcaaggaaagaagtgaaaggtatggcttcca 239  Q
    |||||||| ||| || |||||||| |||||| |   |||||| || ||||||||||| |||   | ||||||||||||||||||| |  |||||||||||    
T  18967674 tcaaaactttgacccttcgccatcaaatagcatatgagattcgagacattaagtcatatgtttgtcggatcaaggaaagaagtgacaaatatggcttcca 18967575  T
Q  240 a 240  Q
    |    
T  18967574 a 18967574  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 18967762 - 18967722
Alignment:
Q  40 tttcgcatagaagacatcattgatgattatatgatccatgt 80  Q
    |||||||||||| ||||| ||||||||||| ||||||||||    
T  18967762 tttcgcatagaaaacatcgttgatgattatgtgatccatgt 18967722  T

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Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 40 - 246
Target Start/End: Original strand, 34979846 - 34980052
Alignment:
Q  40 tttcgcatagaagacatcattgatgattatatgatccatgtgagacaacatcctcgtaatcttgggtgtatggctttactccataatattagtcacttag 139  Q
    ||||| ||||||||  |||||||||||||||||||||||||  | || || |||||| ||| ||| || ||  || ||||| |||| |||  ||||||      
T  34979846 tttcgtatagaagatgtcattgatgattatatgatccatgtagggcagcaacctcgtgatcctggatgcatatctctactcaataagattcctcacttgc 34979945  T
Q  140 tcaaaactatgatccctcgccatcgaatagcgtccaagattcaaggcattaagtcatctgtgcatgggatcaaggaaagaagtgaaaggtatggcttcca 239  Q
    ||||||||||||  ||||  | || |||||| ||  ||||||||| ||| ||||||  |||   ||||||||| |||||||||||||| ||||| |||||    
T  34979946 tcaaaactatgactcctcttcgtcaaatagcatctgagattcaagacatcaagtcagttgtttgtgggatcaaagaaagaagtgaaagatatggtttcca 34980045  T
Q  240 aatccaa 246  Q
    |||||||    
T  34980046 aatccaa 34980052  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 246
Target Start/End: Original strand, 34989004 - 34989109
Alignment:
Q  141 caaaactatgatccctcgccatcgaatagcgtccaagattcaaggcattaagtcatctgtgcatgggatcaaggaaagaagtgaaaggtatggcttccaa 240  Q
    |||||||||||  ||||||| || |||||| ||  ||||||||| ||| ||||||  |||   ||| ||||| |||||||||||||| ||||| ||||||    
T  34989004 caaaactatgactcctcgccgtcaaatagcttctgagattcaagacatcaagtcagttgtttgtggaatcaaagaaagaagtgaaagatatggtttccaa 34989103  T
Q  241 atccaa 246  Q
    ||||||    
T  34989104 atccaa 34989109  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 34975188 - 34975228
Alignment:
Q  40 tttcgcatagaagacatcattgatgattatatgatccatgt 80  Q
    |||| |||||||||  |||||||||||||||||||||||||    
T  34975188 tttctcatagaagatgtcattgatgattatatgatccatgt 34975228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 34988903 - 34988943
Alignment:
Q  40 tttcgcatagaagacatcattgatgattatatgatccatgt 80  Q
    ||||| ||||||||  |||||||||||||||||||||||||    
T  34988903 tttcgtatagaagatgtcattgatgattatatgatccatgt 34988943  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 240
Target Start/End: Complemental strand, 873251 - 873151
Alignment:
Q  140 tcaaaactatgatccctcgccatcgaatagcgtccaagattcaaggcattaagtcatctgtgcatgggatcaaggaaagaagtgaaaggtatggcttcca 239  Q
    |||||||||||| |||||||| |||||||  ||   ||||||| | ||||||||||| ||| | | |||| ||||||||||||||||| |||||||||||    
T  873251 tcaaaactatgaaccctcgccgtcgaataatgtatgagattcaggacattaagtcatatgttctttggattaaggaaagaagtgaaagatatggcttcca 873152  T
Q  240 a 240  Q
    |    
T  873151 a 873151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 240
Target Start/End: Complemental strand, 1234528 - 1234428
Alignment:
Q  140 tcaaaactatgatccctcgccatcgaatagcgtccaagattcaaggcattaagtcatctgtgcatgggatcaaggaaagaagtgaaaggtatggcttcca 239  Q
    |||||||||||| |||||||| |||||||  ||   ||||||| | ||||||||||| ||| | | |||| ||||||||||||||||| |||||||||||    
T  1234528 tcaaaactatgaaccctcgccgtcgaataatgtatgagattcaggacattaagtcatatgttctttggattaaggaaagaagtgaaagatatggcttcca 1234429  T
Q  240 a 240  Q
    |    
T  1234428 a 1234428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 240
Target Start/End: Original strand, 27294344 - 27294472
Alignment:
Q  115 ttactccataatattagtcacttagtcaaaactatgatccctcgccatcgaatagcgtccaagattcaaggcattaag---tcatctgtgcatgggatca 211  Q
    ||||||||||| ||| |||||||  |||||||||||||||||| ||||| |||||| |   | ||||||| ||| |||   ||| || | |  |||||||    
T  27294344 ttactccataagattggtcactttctcaaaactatgatccctctccatcaaatagcatatgaaattcaagacatgaagtgatcacctattcgcgggatca 27294443  T
Q  212 aggaaagaagtgaaaggtatggcttccaa 240  Q
    |||||||||||||||| ||||||||||||    
T  27294444 aggaaagaagtgaaagatatggcttccaa 27294472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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