View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17427_low_2 (Length: 676)
Name: NF17427_low_2
Description: NF17427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17427_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 595; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 18 - 664
Target Start/End: Original strand, 31347958 - 31348604
Alignment:
| Q |
18 |
tcactcatgcattagagacgagtataatgatttagagtaagaaaatggaagagaataaggctatgaaacttgctagttcgtctcatgcattttgatggat |
117 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31347958 |
tcactcatgcattagagacgagtagaatgatttagagtaagaaaatggaagagaataaggctatgaaacttgctagttcgtcttatgcattttgatggat |
31348057 |
T |
|
| Q |
118 |
accaatcatgtatttataacacatgatacaccacttcacatatgagaaagcaatctttcacccagagttgcaattctttgaaatcagaaccaagaaatgt |
217 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31348058 |
accaataatgtatttataacacatgatacaccacttcacatatgagaaagcaacctttcacccagagttgcaattctttgaaatcagaaccaagaaatgt |
31348157 |
T |
|
| Q |
218 |
atttgctcacttacatttatgtagtagcaatgaaacaatacatttcaatcaaatttatgaacagctacaaccattggaacccaaaatacaagaaaaattg |
317 |
Q |
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||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
31348158 |
attagctcacttacatttatgtaatagcaatgaaacaatacatttcaatcaaatttatgaacagttacaaccattggaacccaaaatacaagaaaaatcg |
31348257 |
T |
|
| Q |
318 |
cacaaaacacatgttttcagattgcacagaaacacacctggcactttcatcgtcgacactcagctctgcctagcgcttgtatgagagcttagctccagtc |
417 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31348258 |
cagaaaacacatgttttcagattgcacagaaacacacctggcgctttcatcgtcgacgctcagctctgcctagcgcttgtatgagagcttagctccagtc |
31348357 |
T |
|
| Q |
418 |
cttagcgtccataaacaaagaatcatcgtccgaacttaattctctaacgtgcaacactgtgttttgatcatttcattgtgtttttacatcatgtaattgg |
517 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31348358 |
cttagcgtccataaacagagaatcatcgtccgaacttaattctctaacgtgcaacactgtgttttgatcatttcattgtgtttttacatcatgtaattgg |
31348457 |
T |
|
| Q |
518 |
tcttgggttttttcaataaatctaaaatgattccattattttgaaaatgactcacagtttctcattggacatcctccattttctttgtttctccaataat |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31348458 |
tcttgggttttttcaataaatctaaaatgattccattattttgaaaatgactcacagtttctcatttgacatcctccattttctttgtttctccaataat |
31348557 |
T |
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| Q |
618 |
ttattaatttgtcatgatatatcaagtcttcttctatatagtatatt |
664 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31348558 |
ttattaatttgtcatgatatatcaagtcttcttctatatagtatatt |
31348604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 126 - 303
Target Start/End: Original strand, 3368518 - 3368703
Alignment:
| Q |
126 |
tgtatttataacacatgatacaccacttcacatatgagaaagcaatctttcacccagagttgcaattctttgaaatcagaac--------caagaaatgt |
217 |
Q |
| |
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|||||||||||||||||||| || ||||| || |||||||| | ||||||||| ||||||||| | |||||| ||| ||| |||||||||| |
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| T |
3368518 |
tgtatttataacacatgatatactacttcgaatgtgagaaagaactctttcaccaagagttgcattcttttgaattcataacttttgattcaagaaatgt |
3368617 |
T |
|
| Q |
218 |
atttgctcacttacatttatgtagtagcaatgaaacaatacatttcaatcaaatttatgaacagctacaaccattggaacccaaaa |
303 |
Q |
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||| | ||||||||| || |||| || ||||||||||||||||||||||||| |||||||| || |||||||||||||| |||||| |
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| T |
3368618 |
attggttcacttacagttttgtaataacaatgaaacaatacatttcaatcaagtttatgaagagttacaaccattggaatccaaaa |
3368703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 122 - 191
Target Start/End: Original strand, 31892973 - 31893042
Alignment:
| Q |
122 |
atcatgtatttataacacatgatacaccacttcacatatgagaaagcaatctttcacccagagttgcaat |
191 |
Q |
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||||| ||||||||||| |||||||||||||||| |||||||||||||| |||||||| |||||| |||| |
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| T |
31892973 |
atcatatatttataacatatgatacaccacttcaaatatgagaaagcaacctttcaccaagagttacaat |
31893042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 31892891 - 31892963
Alignment:
| Q |
18 |
tcactcatgcattagagacgagtataatgatttagagtaagaaaatggaagagaataaggctatgaaacttgc |
90 |
Q |
| |
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|||||| ||||||||||| ||| | | ||||||||||| |||||||| | |||||||||||||||||||||| |
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| T |
31892891 |
tcactcgtgcattagagaagaggaggaggatttagagtacgaaaatgggaaagaataaggctatgaaacttgc |
31892963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 208 - 303
Target Start/End: Complemental strand, 1986492 - 1986397
Alignment:
| Q |
208 |
caagaaatgtatttgctcacttacatttatgtagtagcaatgaaacaatacatttcaatcaaatttatgaacagctacaaccattggaacccaaaa |
303 |
Q |
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| T |
1986492 |
caagaaatgtactcgttcacttatagttatgtaataacaatgaaacaatacattacaatcaaatttacgaagaattactactattggaacccaaaa |
1986397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 328
Target Start/End: Complemental strand, 44680763 - 44680551
Alignment:
| Q |
124 |
catgtatttataacacatgatacaccacttcacatatgagaaagcaatctttcacccagagttgcaattctttgaaatcagaac--------caagaaat |
215 |
Q |
| |
|
||||||||||||||| |||||||| ||| |||||||||| || |||| ||||||| ||||||||||| ||||| || ||||| ||||| || |
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| T |
44680763 |
catgtatttataacatatgatacatcac-tcacatatgaaaaggcaacctttcacgaagagttgcaatcatttgagattagaactttttattcaagagat |
44680665 |
T |
|
| Q |
216 |
gtatttgctcacttacatttatgtagtagcaatgaaacaatacatttcaa--tcaaatttatgaacagctacaaccattggaacccaaaatacaaga-aa |
312 |
Q |
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||||| |||||| || |||||| ||| ||||||||||||||||||||| |||||| ||| || || ||| ||||||||||||| ||| ||| || || |
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| T |
44680664 |
gtattaattcactttcagttatgt-gtaacaatgaaacaatacatttcaatctcaaatctataaagagttacgaccattggaaccctaaa-acatgagaa |
44680567 |
T |
|
| Q |
313 |
aattgcacaaaacaca |
328 |
Q |
| |
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|| ||||||||||||| |
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| T |
44680566 |
aaatgcacaaaacaca |
44680551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 44680862 - 44680810
Alignment:
| Q |
24 |
atgcattagagacgagtataatgatttagagtaagaaaatggaagagaataag |
76 |
Q |
| |
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|||||||||||| ||| || |||||| ||||| ||||||||| |||||||||| |
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|
| T |
44680862 |
atgcattagagatgaggatgatgattcagagtgagaaaatgggagagaataag |
44680810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 44850487 - 44850555
Alignment:
| Q |
22 |
tcatgcattagagacgagtataatgatttagagtaagaaaatggaagagaataaggctatgaaacttgc |
90 |
Q |
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||||| |||||||| ||| | ||||| || ||||||||||||| |||||||||| ||||||||||||| |
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| T |
44850487 |
tcatgaattagagaagaggaggatgatctatagtaagaaaatgggagagaataagactatgaaacttgc |
44850555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 475 - 521
Target Start/End: Complemental strand, 13311048 - 13311002
Alignment:
| Q |
475 |
tgtgttttgatcatttcattgtgtttttacatcatgtaattggtctt |
521 |
Q |
| |
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|||||||||||||||| |||||||||| ||||||||||||||||| |
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|
| T |
13311048 |
tgtgttttgatcattttcttgtgtttttgaatcatgtaattggtctt |
13311002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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