View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17427_low_20 (Length: 260)
Name: NF17427_low_20
Description: NF17427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17427_low_20 |
 | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0294 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 25 - 229
Target Start/End: Complemental strand, 19912 - 19708
Alignment:
| Q |
25 |
aaacctatatgtccttgttccgagcaagaaaacaatcaaggcaatgatcattataacacaaggtattccaaatccaagaacccagctatagttatcttga |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19912 |
aaacctatatgtccttgttccgagcaagaaaataatcaaggcaatgatcattataacacaaggtattccaaatccaagaacccagctatagttatcttga |
19813 |
T |
|
| Q |
125 |
atataagtcaagatcggaagtgttgccgtggcccctgcaaccatagtaaaataccaccaattaaagaatgagcttctagctctatgctcctcaggatatt |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19812 |
atataagtcaagatcggaagtgttgccgtggcccctgcaaccatagtaaaataccaccaattaaagaatgagcttctagctctatgctcctccggatatt |
19713 |
T |
|
| Q |
225 |
cttcg |
229 |
Q |
| |
|
|||| |
|
|
| T |
19712 |
tttcg |
19708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 9e-79; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 25 - 229
Target Start/End: Complemental strand, 11698140 - 11697936
Alignment:
| Q |
25 |
aaacctatatgtccttgttccgagcaagaaaacaatcaaggcaatgatcattataacacaaggtattccaaatccaagaacccagctatagttatcttga |
124 |
Q |
| |
|
||||||||| ||| ||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
11698140 |
aaacctataggtcattgttccaagcaagaaaacaatcaaggctatgatcattataacacaagggattccaaatccaagaacccaactatagttatcttgt |
11698041 |
T |
|
| Q |
125 |
atataagtcaagatcggaagtgttgccgtggcccctgcaaccatagtaaaataccaccaattaaagaatgagcttctagctctatgctcctcaggatatt |
224 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||| |
|
|
| T |
11698040 |
atataagtcaagatcgaaagtgttgccgcggcacctgcaaccatagtaaaataccaccaattaaagaatgagcttctagctttgtgctccttaggatatt |
11697941 |
T |
|
| Q |
225 |
cttcg |
229 |
Q |
| |
|
|||| |
|
|
| T |
11697940 |
tttcg |
11697936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 25 - 221
Target Start/End: Complemental strand, 11784327 - 11784131
Alignment:
| Q |
25 |
aaacctatatgtccttgttccgagcaagaaaacaatcaaggcaatgatcattataacacaaggtattccaaatccaagaacccagctatagttatcttga |
124 |
Q |
| |
|
||||||||| ||| ||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11784327 |
aaacctataggtcattgttccaagcaagaaaacaatcaaagcaatgatcattacaacacaaggtattccaaatccaagaacccaactatagttatcttgt |
11784228 |
T |
|
| Q |
125 |
atataagtcaagatcggaagtgttgccgtggcccctgcaaccatagtaaaataccaccaattaaagaatgagcttctagctctatgctcctcaggat |
221 |
Q |
| |
|
|||||| ||||||| ||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11784227 |
atataactcaagattaaaagtgttgccgaggcacctgcaaccatagtaaaataccaccagttaaagaatgagcttctagctctatgctccttaggat |
11784131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 25 - 221
Target Start/End: Complemental strand, 11788158 - 11787962
Alignment:
| Q |
25 |
aaacctatatgtccttgttccgagcaagaaaacaatcaaggcaatgatcattataacacaaggtattccaaatccaagaacccagctatagttatcttga |
124 |
Q |
| |
|
|||||||||||| | ||||| | ||||||||||||||| ||||||||||| | ||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
11788158 |
aaacctatatgtgatagttccaatcaagaaaacaatcaaagcaatgatcataacaacacaaggtattccaaatccaacaacccaactatagttatcttgt |
11788059 |
T |
|
| Q |
125 |
atataagtcaagatcggaagtgttgccgtggcccctgcaaccatagtaaaataccaccaattaaagaatgagcttctagctctatgctcctcaggat |
221 |
Q |
| |
|
|||||| ||||||| ||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
11788058 |
atataactcaagattaaaagtgttgccgaggcacctgcaaccattgtaaaataccaccaattaaagaatgagcttctagctctatgttccttaggat |
11787962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 25 - 221
Target Start/End: Complemental strand, 11800325 - 11800129
Alignment:
| Q |
25 |
aaacctatatgtccttgttccgagcaagaaaacaatcaaggcaatgatcattataacacaaggtattccaaatccaagaacccagctatagttatcttga |
124 |
Q |
| |
|
|||||||||||| | ||||| | ||||||||||||||| ||||||||||| | ||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
11800325 |
aaacctatatgtgatagttccaatcaagaaaacaatcaaagcaatgatcataacaacacaaggtattccaaatccaacaacccaactatagttatcttgt |
11800226 |
T |
|
| Q |
125 |
atataagtcaagatcggaagtgttgccgtggcccctgcaaccatagtaaaataccaccaattaaagaatgagcttctagctctatgctcctcaggat |
221 |
Q |
| |
|
|||||| ||||||| ||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
11800225 |
atataactcaagattaaaagtgttgccgaggcacctgcaaccattgtaaaataccaccaattaaagaatgagcttctagctctatgttccttaggat |
11800129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 25 - 205
Target Start/End: Complemental strand, 11707848 - 11707668
Alignment:
| Q |
25 |
aaacctatatgtccttgttccgagcaagaaaacaatcaaggcaatgatcattataacacaaggtattccaaatccaagaacccagctatagttatcttga |
124 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||| || |||||||||| ||||||||| |||||||||||||||||||| ||| ||||||||| |
|
|
| T |
11707848 |
aaacctatatgtccttgttccaagcaaaaaaacaatcaaagcgatgatcattacaacacaagggattccaaatccaagaacccaactaatgttatcttgt |
11707749 |
T |
|
| Q |
125 |
atataagtcaagatcggaagtgttgccgtggcccctgcaaccatagtaaaataccaccaattaaagaatgagcttctagct |
205 |
Q |
| |
|
||||| ||||||||| ||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11707748 |
atatagttcaagatcgtaagtgttgctgtgcaacctgcaatcatagtaaaataccaccaattaaagaatgagcttctagct |
11707668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 25 - 221
Target Start/End: Complemental strand, 11676625 - 11676429
Alignment:
| Q |
25 |
aaacctatatgtccttgttccgagcaagaaaacaatcaaggcaatgatcattataacacaaggtattccaaatccaagaacccagctatagttatcttga |
124 |
Q |
| |
|
||||||||||||||||||||| ||| | ||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||| ||| ||||||||| |
|
|
| T |
11676625 |
aaacctatatgtccttgttccaagccaaaaaacaatcaaagcaatgatcattacaacacaagggattccaaatccaagaacccaactaatgttatcttgt |
11676526 |
T |
|
| Q |
125 |
atataagtcaagatcggaagtgttgccgtggcccctgcaaccatagtaaaataccaccaattaaagaatgagcttctagctctatgctcctcaggat |
221 |
Q |
| |
|
||||| ||||||| | |||| ||| ||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
11676525 |
atatagttcaagattgtaagtattgatgtgcaacctgcaatcatagtaaaataccaccaattaaagaaagagcttctagctctatgctccttaggat |
11676429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 25 - 221
Target Start/End: Complemental strand, 11684904 - 11684708
Alignment:
| Q |
25 |
aaacctatatgtccttgttccgagcaagaaaacaatcaaggcaatgatcattataacacaaggtattccaaatccaagaacccagctatagttatcttga |
124 |
Q |
| |
|
||||||||||||||||||||| ||| | ||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||| ||| ||||||||| |
|
|
| T |
11684904 |
aaacctatatgtccttgttccaagccaaaaaacaatcaaagcaatgatcattacaacacaagggattccaaatccaagaacccaactaatgttatcttgt |
11684805 |
T |
|
| Q |
125 |
atataagtcaagatcggaagtgttgccgtggcccctgcaaccatagtaaaataccaccaattaaagaatgagcttctagctctatgctcctcaggat |
221 |
Q |
| |
|
||||| ||||||| | |||| ||| ||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
11684804 |
atatagttcaagattgtaagtattgatgtgcaacctgcaatcatagtaaaataccaccaattaaagaaagagcttctagctctatgctccttaggat |
11684708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University