View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17427_low_21 (Length: 257)

Name: NF17427_low_21
Description: NF17427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17427_low_21
NF17427_low_21
[»] scaffold0277 (2 HSPs)
scaffold0277 (1-254)||(13805-14058)
scaffold0277 (1-255)||(4844-5103)
[»] chr6 (58 HSPs)
chr6 (1-254)||(28780900-28781153)
chr6 (1-255)||(27718552-27718806)
chr6 (1-251)||(27725018-27725267)
chr6 (1-255)||(28786038-28786292)
chr6 (2-254)||(27228995-27229245)
chr6 (1-255)||(26655749-26656003)
chr6 (1-255)||(26761720-26761974)
chr6 (1-255)||(26802198-26802456)
chr6 (1-254)||(27604878-27605137)
chr6 (1-232)||(27611175-27611406)
chr6 (1-255)||(27698667-27698919)
chr6 (1-230)||(28792184-28792413)
chr6 (1-255)||(27338238-27338485)
chr6 (1-255)||(27398978-27399225)
chr6 (5-225)||(31284078-31284298)
chr6 (1-253)||(27678716-27678960)
chr6 (5-186)||(26622805-26622986)
chr6 (5-186)||(26728783-26728964)
chr6 (1-134)||(27531370-27531503)
chr6 (4-183)||(27593196-27593375)
chr6 (4-155)||(26884023-26884174)
chr6 (17-247)||(27427792-27428020)
chr6 (26-253)||(27706600-27706819)
chr6 (5-232)||(26823629-26823850)
chr6 (5-185)||(26861446-26861626)
chr6 (5-183)||(27677791-27677969)
chr6 (1-189)||(26646299-26646493)
chr6 (1-189)||(26752267-26752461)
chr6 (1-121)||(25481636-25481756)
chr6 (1-121)||(25579613-25579733)
chr6 (1-121)||(26055820-26055940)
chr6 (1-121)||(26075790-26075910)
chr6 (157-251)||(25538338-25538431)
chr6 (1-121)||(26048739-26048859)
chr6 (1-121)||(26069908-26070028)
chr6 (1-121)||(26142759-26142879)
chr6 (156-251)||(26055724-26055818)
chr6 (157-251)||(25481540-25481633)
chr6 (157-251)||(26048643-26048736)
chr6 (157-251)||(26069812-26069905)
chr6 (157-251)||(26075694-26075787)
chr6 (157-251)||(26142663-26142756)
chr6 (1-121)||(25538434-25538554)
chr6 (157-201)||(25579566-25579610)
chr6 (55-181)||(28098596-28098725)
chr6 (5-84)||(29825958-29826037)
chr6 (65-181)||(26342171-26342290)
chr6 (11-83)||(26848592-26848664)
chr6 (5-153)||(28325343-28325491)
chr6 (5-96)||(27214336-27214427)
chr6 (5-96)||(27234801-27234892)
chr6 (1-120)||(28234459-28234578)
chr6 (20-69)||(27665309-27665358)
chr6 (111-177)||(26018770-26018836)
chr6 (111-177)||(26139474-26139540)
chr6 (20-85)||(25071589-25071654)
chr6 (63-120)||(28226845-28226902)
chr6 (21-117)||(28242702-28242798)
[»] scaffold0349 (3 HSPs)
scaffold0349 (1-251)||(3595-3844)
scaffold0349 (1-255)||(14528-14780)
scaffold0349 (88-255)||(8061-8228)
[»] scaffold1254 (1 HSPs)
scaffold1254 (1-255)||(90-337)
[»] scaffold0419 (1 HSPs)
scaffold0419 (1-255)||(7292-7539)
[»] chr4 (8 HSPs)
chr4 (22-250)||(18699581-18699807)
chr4 (5-255)||(18731668-18731916)
chr4 (22-255)||(18655658-18655889)
chr4 (5-255)||(18679731-18679979)
chr4 (5-186)||(18724249-18724430)
chr4 (17-247)||(17989226-17989454)
chr4 (17-247)||(18073535-18073763)
chr4 (21-111)||(5091147-5091237)
[»] chr1 (3 HSPs)
chr1 (2-214)||(28164523-28164735)
chr1 (23-209)||(28127862-28128042)
chr1 (5-194)||(268521-268711)
[»] chr8 (2 HSPs)
chr8 (5-181)||(29273947-29274123)
chr8 (4-133)||(31903733-31903862)
[»] scaffold0003 (1 HSPs)
scaffold0003 (17-247)||(59343-59571)
[»] scaffold0038 (4 HSPs)
scaffold0038 (5-153)||(116658-116806)
scaffold0038 (1-120)||(34620-34739)
scaffold0038 (63-120)||(27343-27400)
scaffold0038 (21-117)||(42864-42960)
[»] scaffold0019 (1 HSPs)
scaffold0019 (21-153)||(58475-58607)
[»] scaffold0713 (1 HSPs)
scaffold0713 (111-177)||(5916-5982)
[»] chr5 (1 HSPs)
chr5 (5-82)||(16688944-16689021)


Alignment Details
Target: scaffold0277 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 13805 - 14058
Alignment:
Q  1 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatg 100  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||    
T  13805 atctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtg 13904  T
Q  101 cccctaaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattgaaagaaattggatga 200  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||    
T  13905 cccctaaaactgaggaacacttggtaagtgaatgcagaggaaaatgaagaggaagaggaaggtaattgcatagccatgataattgagagaaattggatga 14004  T
Q  201 aaaaagagtctgggaatgcagaatatgaatgaataagtttttgtggtctgtgat 254  Q
    ||||||||| || |||| |||||||||||||| |  ||||||||||||||||||    
T  14005 aaaaagagtttgagaattcagaatatgaatgagtttgtttttgtggtctgtgat 14058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 4844 - 5103
Alignment:
Q  1 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatg 100  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||    
T  4844 atctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcaatg 4943  T
Q  101 cccctaaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattgaaagaaattggatga 200  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||| |||||||| |||||||| |||||||||||||    
T  4944 cccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatagccataagaattgagagaaattggatga 5043  T
Q  201 aaaaagagtctgggaatgcagaatatg-----aatgaataagtttttgtggtctgtgatg 255  Q
    ||||||||| || |||| |||||||||     ||||||||||||||||||||||||||||    
T  5044 aaaaagagtttgagaattcagaatatgaatttaatgaataagtttttgtggtctgtgatg 5103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 58)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 28781153 - 28780900
Alignment:
Q  1 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatg 100  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||    
T  28781153 atctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtg 28781054  T
Q  101 cccctaaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattgaaagaaattggatga 200  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||    
T  28781053 cccctaaaactgaggaacacttggtaagtgaatgcagaggaaaatgaagaggaagaggaaggtaattgcatagccatgataattgagagaaattggatga 28780954  T
Q  201 aaaaagagtctgggaatgcagaatatgaatgaataagtttttgtggtctgtgat 254  Q
    ||||||||| || |||| |||||||||||||| |  ||||||||||||||||||    
T  28780953 aaaaagagtttgagaattcagaatatgaatgagtttgtttttgtggtctgtgat 28780900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 27718552 - 27718806
Alignment:
Q  1 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||| ||    
T  27718552 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaactgtgccgagtgtcagtg 27718651  T
Q  101 cccctaaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattgaaagaaattggatga 200  Q
    |||||||||||||||||||||||||||||||||  || ||| ||||||||||| |||||||||||||| ||||||||||||||||| |||||| ||||||    
T  27718652 cccctaaaactgaggaacacttggtaagtgaatccatgggagaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaataggatga 27718751  T
Q  201 aaaaagagtctgggaatgcagaatatgaatgaataagtttttgtggtctgtgatg 255  Q
    ||||||||| || ||||||||||||||||||| | | |||||||| |||||||||    
T  27718752 aaaaagagtttgagaatgcagaatatgaatgagtgaatttttgtgttctgtgatg 27718806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 27725018 - 27725267
Alignment:
Q  1 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||    
T  27725018 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtg 27725117  T
Q  101 cccctaaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattgaaagaaattggatga 200  Q
    ||||||||||| |||||||||||||||||||||  |||||||||||||||||| |||||||||||||| |||||||||| |||||| |||||| ||||||    
T  27725118 cccctaaaactaaggaacacttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatagccatgacaattgagagaaataggatga 27725217  T
Q  201 aaaaagagtctgggaatgcagaatatgaatgaataagtttttgtggtctgt 251  Q
    ||||||||| || ||||||||||||||||||  ||| ||||||||||||||    
T  27725218 aaaaagagtttgagaatgcagaatatgaatg-gtaaatttttgtggtctgt 27725267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 28786292 - 28786038
Alignment:
Q  1 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatg 100  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||| ||    
T  28786292 atctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcagtg 28786193  T
Q  101 cccctaaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattgaaagaaattggatga 200  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||| |||||||| |||||||| |||||||||||||    
T  28786192 cccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatagccataagaattgagagaaattggatga 28786093  T
Q  201 aaaaagagtctgggaatgcagaatatgaatgaataagtttttgtggtctgtgatg 255  Q
    ||||||||| || |||| |||||||||||||| |  |||||||||||||||||||    
T  28786092 aaaaagagtttgagaattcagaatatgaatgagtttgtttttgtggtctgtgatg 28786038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 2 - 254
Target Start/End: Complemental strand, 27229245 - 27228995
Alignment:
Q  2 tctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatgc 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  27229245 tctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtgccgagtgtcagtgc 27229146  T
Q  102 ccctaaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattgaaagaaattggatgaa 201  Q
    |||||||||| |||||||||||||||||||||  | ||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||      
T  27229145 ccctaaaactaaggaacacttggtaagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtatagccatgagacttgagagaaattggatg-- 27229048  T
Q  202 aaaagagtctgggaatgcagaatatgaatgaataagtttttgtggtctgtgat 254  Q
    |||||||| |  ||||||||||||||||||| || ||||||||||| ||||||    
T  27229047 aaaagagttttagaatgcagaatatgaatgagtatgtttttgtggtatgtgat 27228995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 26656003 - 26655749
Alignment:
Q  1 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatg 100  Q
    |||||||||  |||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||| |||||||||||||| |||||||||    
T  26656003 atctcctctgagaagatcattgtcatcaatgaaagtatggattcccttatcaataagagccttgtagagattgccggtaaaaccgtgccgggtgtcaatg 26655904  T
Q  101 cccctaaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattgaaagaaattggatga 200  Q
    ||||||||||||||||||||||||||  | ||   |||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||    
T  26655903 cccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggatga 26655804  T
Q  201 aaaaagagtctgggaatgcagaatatgaatgaataagtttttgtggtctgtgatg 255  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  26655803 aaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgtgatg 26655749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 26761974 - 26761720
Alignment:
Q  1 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatg 100  Q
    |||||||||  |||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||| |||||||||||||| |||||||||    
T  26761974 atctcctctgagaagatcattgtcatcaatgaaagtatggattcccttatcaataagagccttgtagagattgccggtaaaaccgtgccgggtgtcaatg 26761875  T
Q  101 cccctaaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattgaaagaaattggatga 200  Q
    ||||||||||||||||||||||||||  | ||   |||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||    
T  26761874 cccctaaaactgaggaacacttggtatttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggatga 26761775  T
Q  201 aaaaagagtctgggaatgcagaatatgaatgaataagtttttgtggtctgtgatg 255  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  26761774 aaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtctgtgatg 26761720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 26802456 - 26802198
Alignment:
Q  1 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||| ||    
T  26802456 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcaataagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtg 26802357  T
Q  101 cccctaaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattgaaagaaattggatga 200  Q
    |||||||||||||||||||||||||||||||||  ||| |||||||||||||| |||||||| || ||||||||||||| |||||  |||||||||||||    
T  26802356 cccctaaaactgaggaacacttggtaagtgaatccataagaaaatgaagaggatgaggaaggagactgcatagccatgaaaattgtgagaaattggatga 26802257  T
Q  201 a----aaaagagtctgggaatgcagaatatgaatgaataagtttttgtggtctgtgatg 255  Q
    |    |||||||| || ||||||||||||||||||| ||||||||||||||||||||||    
T  26802256 aaaaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtgatg 26802198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 27604878 - 27605137
Alignment:
Q  1 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatg 100  Q
    |||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||| ||    
T  27604878 atctcctcttcgaagatcattttcatcaatgaaggtatgaattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtg 27604977  T
Q  101 cccctaaaactgaggaacacttggtaagtgaatgtataggaaaatgaa------gaggaagaggaaggtgattgcatagccatgagaattgaaagaaatt 194  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||      ||||| ||||||||| |||||||||||||||||||||| |||||||    
T  27604978 cccctaaaactaaggaacacttggtaagtgaatgcataggaaaatgaagaggatgaggatgaggaaggtaattgcatagccatgagaattgagagaaatt 27605077  T
Q  195 ggatgaaaaaagagtctgggaatgcagaatatgaatgaataagtttttgtggtctgtgat 254  Q
    ||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||    
T  27605078 ggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtgat 27605137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 27611175 - 27611406
Alignment:
Q  1 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatg 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||| ||    
T  27611175 atctcctcttggaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcagtg 27611274  T
Q  101 cccctaaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattgaaagaaattggatga 200  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||| | ||||||||||||||| |||||| |||||||||||||    
T  27611275 cccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaagaagaagaggaagctaattgcatagccatgaaaattgagagaaattggatga 27611374  T
Q  201 aaaaagagtctgggaatgcagaatatgaatga 232  Q
    ||||||||| || |||||||||||||||||||    
T  27611375 aaaaagagtttgagaatgcagaatatgaatga 27611406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 27698667 - 27698919
Alignment:
Q  1 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||    
T  27698667 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtg 27698766  T
Q  101 cccctaaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattgaaagaaattggatga 200  Q
    ||||||||||||| |||||||||||||||||||  |||||||||||||| ||| |||||||||||||| ||||||||||||||||| |||||| |||||     
T  27698767 cccctaaaactgatgaacacttggtaagtgaatccataggaaaatgaagtggatgaggaaggtgattgtatagccatgagaattgagagaaataggatg- 27698865  T
Q  201 aaaaagagtctgggaatgcagaatatgaatgaataagtttttgtggtctgtgatg 255  Q
    ||||||||| || ||||||||||||||||||| |||  ||||||| |||||||||    
T  27698866 aaaaagagtttgagaatgcagaatatgaatgagtaa-attttgtgttctgtgatg 27698919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 28792413 - 28792184
Alignment:
Q  1 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatg 100  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||| ||    
T  28792413 atctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcagtg 28792314  T
Q  101 cccctaaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattgaaagaaattggatga 200  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||| |||||||| |||||||| |||||||||||||    
T  28792313 cccctaaaactgaggaacacttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatagccataagaattgagagaaattggatga 28792214  T
Q  201 aaaaagagtctgggaatgcagaatatgaat 230  Q
    ||||||||| || |||| ||||||||||||    
T  28792213 aaaaagagtttgagaattcagaatatgaat 28792184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 27338238 - 27338485
Alignment:
Q  1 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatg 100  Q
    ||||||||||| |||||| ||||||||||||||||| | ||||||||||||| |||||||||||||||||||||| ||||||||||   |||||||||||    
T  27338238 atctcctctttcaagatcgttgtcatcaatgaaggttttgattcccttgtcaataagagccttgtagagattgccggtaaaaccgtaaagagtgtcaatg 27338337  T
Q  101 cccctaaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattgaaagaaattggatga 200  Q
     ||||||||||||||||||| |||||  ||||   | |||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||  |||||    
T  27338338 tccctaaaactgaggaacacatggtatttgaacccagaggaaattgaagaggaagaggaaagtgattgcatagccatgagaattgagagaaataagatga 27338437  T
Q  201 aaaaagagtctgggaatgcagaatatgaatgaataagtttttgtggtctgtgatg 255  Q
    ||||| ||| ||       ||||||||||||| ||||||||||||||||||||||    
T  27338438 aaaaaaagtttg-------agaatatgaatgagtaagtttttgtggtctgtgatg 27338485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 27398978 - 27399225
Alignment:
Q  1 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatg 100  Q
    ||||||||||| |||||| ||||||||||||||||| | ||||||||||||| |||||||||||||||||||||| ||||||||||   |||||||||||    
T  27398978 atctcctctttcaagatcgttgtcatcaatgaaggttttgattcccttgtcaataagagccttgtagagattgccggtaaaaccgtaaagagtgtcaatg 27399077  T
Q  101 cccctaaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattgaaagaaattggatga 200  Q
     ||||||||||||||||||| |||||  ||||   | |||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||  |||||    
T  27399078 tccctaaaactgaggaacacatggtatttgaacccagaggaaattgaagaggaagaggaaagtgattgcatagccatgagaattgagagaaataagatga 27399177  T
Q  201 aaaaagagtctgggaatgcagaatatgaatgaataagtttttgtggtctgtgatg 255  Q
    ||||| ||| ||       ||||||||||||| ||||||||||||||||||||||    
T  27399178 aaaaaaagtttg-------agaatatgaatgagtaagtttttgtggtctgtgatg 27399225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 5 - 225
Target Start/End: Complemental strand, 31284298 - 31284078
Alignment:
Q  5 cctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatgcccc 104  Q
    ||||||||||| ||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||| | |||||||||| | ||||    
T  31284298 cctctttgaagttcactatcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagattgccggtgaaaccataccgagtgtcacttcccc 31284199  T
Q  105 taaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattgaaagaaattggatgaaaaa 204  Q
    | ||||| ||||| ||||||||  |||||  |||||||| ||||||||||||||||| ||||||||||||||||||| |||| ||||  |||||||| ||    
T  31284198 tgaaactaaggaatacttggtatttgaatacataggaaattgaagaggaagaggaagatgattgcatagccatgagatttgagagaatatggatgaagaa 31284099  T
Q  205 agagtctgggaatgcagaata 225  Q
    ||| | || ||||||||||||    
T  31284098 agaatttgagaatgcagaata 31284078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 27678960 - 27678716
Alignment:
Q  1 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatg 100  Q
    |||||||||||||||| |||| | |||||||||||| | ||||||||||||||||||||||||||||||||| || || ||||||| |||||||||| |     
T  27678960 atctcctctttgaagaccattcttatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagattcccggtgaaaccgtaccgagtgtcactt 27678861  T
Q  101 cccctaaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattgaaagaaattggatga 200  Q
    || || ||||||||||| ||||||||  || |   |||||||| ||||| ||||||||||||||||||||||||||||||| || | ||||||| |||||    
T  27678860 cctctgaaactgaggaatacttggtatttgtactcataggaaattgaagtggaagaggaaggtgattgcatagccatgagattttagagaaattagatga 27678761  T
Q  201 aaaaagagtctgggaatgcagaatatgaatgaataagtttttgtggtctgtga 253  Q
    ||||||||| ||       |||||||||||| | |||||||||||||||||||    
T  27678760 aaaaagagtttg-------agaatatgaatg-agaagtttttgtggtctgtga 27678716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 5 - 186
Target Start/End: Complemental strand, 26622986 - 26622805
Alignment:
Q  5 cctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatgcccc 104  Q
    ||||||||||| |||   |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||| |||| |    
T  26622986 cctctttgaagttcacgatcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatttccagtgaaaccgtaccgagtgtcactgcctc 26622887  T
Q  105 taaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattga 186  Q
    | ||||| ||||||||||||||  |||||  |||||||| ||||||||||||||| ||||||||||||||||||| ||||||    
T  26622886 tgaaacttaggaacacttggtatttgaattgataggaaattgaagaggaagaggatggtgattgcatagccatgataattga 26622805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 5 - 186
Target Start/End: Complemental strand, 26728964 - 26728783
Alignment:
Q  5 cctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatgcccc 104  Q
    ||||||||||| |||   |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||| |||| |    
T  26728964 cctctttgaagttcacgatcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatttccagtgaaaccgtaccgagtgtcactgcctc 26728865  T
Q  105 taaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattga 186  Q
    | ||||| ||||||||||||||  |||||  |||||||| ||||||||||||||| ||||||||||||||||||| ||||||    
T  26728864 tgaaacttaggaacacttggtatttgaattgataggaaattgaagaggaagaggatggtgattgcatagccatgataattga 26728783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 27531370 - 27531503
Alignment:
Q  1 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatg 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||   |    
T  27531370 atctcctctttgaagatcattgtcatcaatgaaggtatagattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtccgcg 27531469  T
Q  101 cccctaaaactgaggaacacttggtaagtgaatg 134  Q
    ||||||||||||||||||||||||||||||||||    
T  27531470 cccctaaaactgaggaacacttggtaagtgaatg 27531503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 4 - 183
Target Start/End: Original strand, 27593196 - 27593375
Alignment:
Q  4 tcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatgccc 103  Q
    ||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| || ||||||| |||||||||| | ||     
T  27593196 tcctctttgaagaccattgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagattgccggtgaaaccgtaccgagtgtcacttcct 27593295  T
Q  104 ctaaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaat 183  Q
    || ||||||||||| ||||||||  || |   |||||||| ||||| |||||||||||||||||||||||||||||||||    
T  27593296 ctgaaactgaggaatacttggtatttgtaatcataggaaattgaagtggaagaggaaggtgattgcatagccatgagaat 27593375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 4 - 155
Target Start/End: Complemental strand, 26884174 - 26884023
Alignment:
Q  4 tcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatgccc 103  Q
    ||||||| |||||| ||| |||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||| ||||| | |||||||||| | ||     
T  26884174 tcctcttggaagatgattatcatcaatgaaggtgtggattcccttgttagtaagagccttgtagagatttccagtgaaaccataccgagtgtcacttcct 26884075  T
Q  104 ctaaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaag 155  Q
    || |||||||||||||||||||||||||||  ||||||||||||||||||||    
T  26884074 ctgaaactgaggaacacttggtaagtgaatccataggaaaatgaagaggaag 26884023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 27427792 - 27428020
Alignment:
Q  17 tcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatgcccctaaaactgagga 116  Q
    |||| |||||||  ||||||| | |||||||||||| ||||||||||  |||||||||| || ||||||| |||||||||  ||||| || || ||||||    
T  27427792 tcatcgtcatcatggaaggtacgaattcccttgtcaataagagccttcaagagattgccggtgaaaccgtaccgagtgtcggtgcccttacaaatgagga 27427891  T
Q  117 acacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattgaaagaaattggatgaaaaaagagtctgggaa 216  Q
    |||| | |||| |||||| ||||||||||||||||||| || ||||| ||||||| |||||||||||||| ||||||  ||||  | |||||| || |||    
T  27427892 acacatcgtaactgaatgcataggaaaatgaagaggaatagaaaggtaattgcatggccatgagaattgagagaaataagatg--agaagagtttgagaa 27427989  T
Q  217 tgcagaatatgaatgaataagtttttgtggt 247  Q
    ||||||||||||||||  | |||||||||||    
T  27427990 tgcagaatatgaatgaggatgtttttgtggt 27428020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 26 - 253
Target Start/End: Original strand, 27706600 - 27706819
Alignment:
Q  26 tcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatgcccctaaaactgaggaacacttggt 125  Q
    ||||||||||| |||||||||||||||  || |||||||||||||||||| || ||||||| ||||||||||   || || ||||||||||| |||||||    
T  27706600 tcaatgaaggtgtggattcccttgtcatcaaaagccttgtagagattgcctgtgaaaccgtaccgagtgtcacctcctctgaaactgaggaatacttggt 27706699  T
Q  126 aagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattgaaagaaattggatgaaaaaagagtctgggaatgcagaata 225  Q
    |  || |   |||||||| ||||| ||||||| ||||||||||||||||||||||| || | ||||||| |||||||||||||| ||       ||||||    
T  27706700 atttgtactcataggaaattgaagtggaagagaaaggtgattgcatagccatgagattttagagaaattagatgaaaaaagagtttg-------agaata 27706792  T
Q  226 tgaatgaataagtttttgtggtctgtga 253  Q
    |||||| | |||||||||||||||||||    
T  27706793 tgaatg-agaagtttttgtggtctgtga 27706819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 232
Target Start/End: Complemental strand, 26823850 - 26823629
Alignment:
Q  5 cctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatgcccc 104  Q
    ||||||||||| |||   |||||||  ||||| |||||||||||||| ||||||||||||||||||||||| |||||  | | ||||||||||  ||| |    
T  26823850 cctctttgaagttcacgatcatcaaaaaaggtgtggattcccttgtctgtaagagccttgtagagattgccggtaaattcataccgagtgtcagcgcctc 26823751  T
Q  105 taaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattgaaagaaattggatgaaaaa 204  Q
    |||||||||| |||||||||||  ||||   ||| |||| |||||||      |||| ||| |||||||||||||||||||| |||||||||| ||| ||    
T  26823750 taaaactgagaaacacttggtatttgaaatcatatgaaactgaagag------gaagttgactgcatagccatgagaattgagagaaattggacgaagaa 26823657  T
Q  205 agagtctgggaatgcagaatatgaatga 232  Q
    ||||| || |||||||||||||||||||    
T  26823656 agagtttgagaatgcagaatatgaatga 26823629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 185
Target Start/End: Complemental strand, 26861626 - 26861446
Alignment:
Q  5 cctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatgcccc 104  Q
    ||||||||||| |||   ||||| |||||||| || |||||||||||||||||||||||||||||||| || |||||||| | |||||||||| | || |    
T  26861626 cctctttgaagttcacgatcatccatgaaggtgtgaattcccttgtcagtaagagccttgtagagattaccggtaaaaccataccgagtgtcacttcctc 26861527  T
Q  105 taaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattg 185  Q
    | ||||||||||| || |||||  |||||  ||||||||  |||||||||||| ||||||||||||||||||| |||||||    
T  26861526 tgaaactgaggaatacctggtatttgaatccataggaaatggaagaggaagagcaaggtgattgcatagccatcagaattg 26861446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 5 - 183
Target Start/End: Original strand, 27677791 - 27677969
Alignment:
Q  5 cctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatgcccc 104  Q
    ||||||||||| ||||  |  ||||||||||| |||||||||||||||  ||||||||||||||||||||| || ||||||| |||||||||| | || |    
T  27677791 cctctttgaagttcatgattgtcaatgaaggtgtggattcccttgtcatcaagagccttgtagagattgccggtgaaaccgtaccgagtgtcacttcctc 27677890  T
Q  105 taaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaat 183  Q
    | ||| ||||||| ||||||||  || |   |||||||| ||||| |||||||||||||||||||||||||||||||||    
T  27677891 tgaaattgaggaatacttggtatttgtactcataggaaattgaagtggaagaggaaggtgattgcatagccatgagaat 27677969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 26646493 - 26646299
Alignment:
Q  1 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatg 100  Q
    ||||||||| | |||||||   |||||||||||||| || |||||||||||||||||||||||||||||||  |||||||||||||  ||||||||| ||    
T  26646493 atctcctctcttaagatcacaatcatcaatgaaggtgtgaattcccttgtcagtaagagccttgtagagatgtccagtaaaaccgtcacgagtgtcactg 26646394  T
Q  101 cccctaaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaaga------ggaaggtgattgcatagccatgagaattgaaag 189  Q
    ||||| ||  ||||||| || ||||| ||||||   ||||||| | ||||||||||      |||||| ||||||||||||||||||||||||||    
T  26646393 cccctgaagttgaggaagacctggtaggtgaatccgtaggaaattaaagaggaagaggaataggaaggagattgcatagccatgagaattgaaag 26646299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 26752461 - 26752267
Alignment:
Q  1 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatg 100  Q
    ||||||||| | |||||||   |||||||||||||| || |||||||||||||||||||||||||||||||  |||||||||||||  ||||||||| ||    
T  26752461 atctcctctcttaagatcacaatcatcaatgaaggtgtgaattcccttgtcagtaagagccttgtagagatgtccagtaaaaccgtcacgagtgtcactg 26752362  T
Q  101 cccctaaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaaga------ggaaggtgattgcatagccatgagaattgaaag 189  Q
    ||||| ||  ||||||| || ||||| ||||||   ||||||| | ||||||||||      |||||| ||||||||||||||||||||||||||    
T  26752361 cccctgaagttgaggaagacctggtaggtgaatccgtaggaaattaaagaggaagaggaataggaaggagattgcatagccatgagaattgaaag 26752267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 25481756 - 25481636
Alignment:
Q  1 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatg 100  Q
    ||||||||||||||||||||| ||||||||||| ||| | ||||||||||||  ||||||||| |||||||| || ||||||  ||  ||||||||| ||    
T  25481756 atctcctctttgaagatcattttcatcaatgaaagtacgaattcccttgtcaacaagagccttatagagattaccggtaaaattgttgcgagtgtcactg 25481657  T
Q  101 cccctaaaactgaggaacact 121  Q
    ||||| ||| |||||||||||    
T  25481656 cccctgaaattgaggaacact 25481636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 25579733 - 25579613
Alignment:
Q  1 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatg 100  Q
    ||||||||||||||||||||| ||||||| ||||||| | ||||||||||||  ||||||||| |||||||| || ||||||  ||  ||||||||| ||    
T  25579733 atctcctctttgaagatcattatcatcaaagaaggtacgaattcccttgtcaacaagagccttatagagattaccggtaaaagtgttgcgagtgtcactg 25579634  T
Q  101 cccctaaaactgaggaacact 121  Q
    || || |||||||||||||||    
T  25579633 cctctgaaactgaggaacact 25579613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 26055940 - 26055820
Alignment:
Q  1 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatg 100  Q
    ||||||||||||||||||||| ||||||||||| ||||  ||||||||||||  ||||||||| |||||||| || ||||||  ||  ||||||||| ||    
T  26055940 atctcctctttgaagatcattttcatcaatgaaagtattaattcccttgtcaacaagagccttatagagattaccggtaaaattgttgcgagtgtcactg 26055841  T
Q  101 cccctaaaactgaggaacact 121  Q
    ||||| ||| |||||||||||    
T  26055840 cccctgaaaatgaggaacact 26055820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 26075910 - 26075790
Alignment:
Q  1 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatg 100  Q
    ||||||||||||||||||||| ||||||||||| ||||  ||||||||||||  ||||||||| |||||||| || ||||||  ||  ||||||||| ||    
T  26075910 atctcctctttgaagatcattttcatcaatgaaagtattaattcccttgtcaacaagagccttatagagattaccggtaaaattgttgcgagtgtcactg 26075811  T
Q  101 cccctaaaactgaggaacact 121  Q
    ||||| ||| |||||||||||    
T  26075810 cccctgaaattgaggaacact 26075790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 157 - 251
Target Start/End: Complemental strand, 25538431 - 25538338
Alignment:
Q  157 ggaaggtgattgcatagccatgagaattgaaagaaattggatgaaaaaagagtctgggaatgcagaatatgaatgaataagtttttgtggtctgt 251  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||  |||| ||||||||||||| ||| ||| ||||||||||    
T  25538431 ggaaggtgattgcatagccatgagaattgaaagaatttggatgaaaaaagactttgaaaatggagaatatgaatgattaa-tttgtgtggtctgt 25538338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 26048859 - 26048739
Alignment:
Q  1 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatg 100  Q
    ||||||||||| ||||||||| ||||||||||| |||   |||||||||||| | |||||||| |||||||| || ||||||  ||  ||||||||| ||    
T  26048859 atctcctctttcaagatcattatcatcaatgaaagtacaaattcccttgtcaatgagagccttatagagattaccggtaaaattgttgcgagtgtcactg 26048760  T
Q  101 cccctaaaactgaggaacact 121  Q
    ||||| |||||||||||||||    
T  26048759 cccctgaaactgaggaacact 26048739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 26070028 - 26069908
Alignment:
Q  1 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatg 100  Q
    ||||||||||| ||||||||| ||||||||||| |||   |||||||||||| | |||||||| |||||||| || ||||||  ||  ||||||||| ||    
T  26070028 atctcctctttcaagatcattatcatcaatgaaagtacaaattcccttgtcaatgagagccttatagagattaccggtaaaattgttgcgagtgtcactg 26069929  T
Q  101 cccctaaaactgaggaacact 121  Q
    ||||| |||||||||||||||    
T  26069928 cccctgaaactgaggaacact 26069908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 26142879 - 26142759
Alignment:
Q  1 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatg 100  Q
    ||||||||||| ||||||||| ||||||||||| ||| | ||||||||||||  ||||||||| |||||||| || |||||   ||  ||||||||| ||    
T  26142879 atctcctctttcaagatcattatcatcaatgaaagtacgaattcccttgtcaacaagagccttatagagattaccggtaaatttgttgcgagtgtcactg 26142780  T
Q  101 cccctaaaactgaggaacact 121  Q
    ||||| |||||||||||||||    
T  26142779 cccctgaaactgaggaacact 26142759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 156 - 251
Target Start/End: Complemental strand, 26055818 - 26055724
Alignment:
Q  156 aggaaggtgattgcatagccatgagaattgaaagaaattggatgaaaaaagagtctgggaatgcagaatatgaatgaataagtttttgtggtctgt 251  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||| | ||  |||| ||||||||||||| ||| ||| ||||||||||    
T  26055818 aggaaggtgattgcatagccatgagaattgaaagaatatggatgaaaaaagactttgaaaatggagaatatgaatgagtaa-tttgtgtggtctgt 26055724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 157 - 251
Target Start/End: Complemental strand, 25481633 - 25481540
Alignment:
Q  157 ggaaggtgattgcatagccatgagaattgaaagaaattggatgaaaaaagagtctgggaatgcagaatatgaatgaataagtttttgtggtctgt 251  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| | | ||  |||| ||||||||||||| ||| ||| ||||||||||    
T  25481633 ggaaggtgattgcatagccatgagaattgaaagaatttggatgaaaaaaaactttgaaaatggagaatatgaatgagtaa-tttgtgtggtctgt 25481540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 157 - 251
Target Start/End: Complemental strand, 26048736 - 26048643
Alignment:
Q  157 ggaaggtgattgcatagccatgagaattgaaagaaattggatgaaaaaagagtctgggaatgcagaatatgaatgaataagtttttgtggtctgt 251  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||| | ||  |||| ||||||||||||| ||| ||| ||||||||||    
T  26048736 ggaaggtgattgcatagccatgagaattgaaagaatatggatgaaaaaagactttgaaaatggagaatatgaatgagtaa-tttgtgtggtctgt 26048643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 157 - 251
Target Start/End: Complemental strand, 26069905 - 26069812
Alignment:
Q  157 ggaaggtgattgcatagccatgagaattgaaagaaattggatgaaaaaagagtctgggaatgcagaatatgaatgaataagtttttgtggtctgt 251  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||| | ||  |||| ||||||||||||| ||| ||| ||||||||||    
T  26069905 ggaaggtgattgcatagccatgagaattgaaagaatatggatgaaaaaagactttgaaaatggagaatatgaatgagtaa-tttgtgtggtctgt 26069812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 157 - 251
Target Start/End: Complemental strand, 26075787 - 26075694
Alignment:
Q  157 ggaaggtgattgcatagccatgagaattgaaagaaattggatgaaaaaagagtctgggaatgcagaatatgaatgaataagtttttgtggtctgt 251  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||| | ||  |||| ||||||||||||| ||| ||| ||||||||||    
T  26075787 ggaaggtgattgcatagccatgagaattgaaagaatatggatgaaaaaagactttgaaaatggagaatatgaatgagtaa-tttgtgtggtctgt 26075694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 157 - 251
Target Start/End: Complemental strand, 26142756 - 26142663
Alignment:
Q  157 ggaaggtgattgcatagccatgagaattgaaagaaattggatgaaaaaagagtctgggaatgcagaatatgaatgaataagtttttgtggtctgt 251  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||| | ||  |||| ||||||||||||| ||| ||| ||||||||||    
T  26142756 ggaaggtgattgcatagccatgagaattgaaagaatatggatgaaaaaagactttgaaaatggagaatatgaatgagtaa-tttgtgtggtctgt 26142663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 25538554 - 25538434
Alignment:
Q  1 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatg 100  Q
    ||||||||||| ||||||||| ||||| ||||| |||   ||||||||||||  ||||||||| |||||||| || |||||   ||  ||||||||| ||    
T  25538554 atctcctctttcaagatcattatcatctatgaaagtactaattcccttgtcaacaagagccttatagagattaccggtaaatttgttgcgagtgtcactg 25538455  T
Q  101 cccctaaaactgaggaacact 121  Q
    ||||| |||||||||||||||    
T  25538454 cccctgaaactgaggaacact 25538434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 25579610 - 25579566
Alignment:
Q  157 ggaaggtgattgcatagccatgagaattgaaagaaattggatgaa 201  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  25579610 ggaaggtgattgcatagccatgagaattgaaagaatttggatgaa 25579566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 181
Target Start/End: Original strand, 28098596 - 28098725
Alignment:
Q  55 aagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatgcccctaaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaa 154  Q
    |||||| ||||||||||| ||||||||||| | |||||||||  ||||||||||| | || ||||| |  || ||||||  ||| || ||||||||| ||    
T  28098596 aagagctttgtagagatttccagtaaaaccataccgagtgtcggtgcccctaaaattaagaaacacgtcataggtgaatccataagagaatgaagagaaa 28098695  T
Q  155 gaggaaggtgatt---gcatagccatgaga 181  Q
    ||||||| |||||   ||||||||||||||    
T  28098696 gaggaagatgattggagcatagccatgaga 28098725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 29826037 - 29825958
Alignment:
Q  5 cctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaacc 84  Q
    ||||||||||| || |||||||||||||||||  | |||  ||||||||| ||||| |||||||||||||| ||||||||    
T  29826037 cctctttgaagctctttgtcatcaatgaaggtgcgaattttcttgtcagttagagctttgtagagattgccggtaaaacc 29825958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 181
Target Start/End: Original strand, 26342171 - 26342290
Alignment:
Q  65 tagagattgccagtaaaaccgtgccgagtgtcaatgcccctaaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtg 164  Q
    |||| ||||||||||||||| |  |||||| |||||||||||||| |||||||||| |  || ||||||  ||| || ||||||||| ||||||| | ||    
T  26342171 tagatattgccagtaaaaccatagcgagtgccaatgcccctaaaattgaggaacacatcatatgtgaatccatatgagaatgaagagaaagaggacgatg 26342270  T
Q  165 att---gcatagccatgaga 181  Q
    |||   ||||||||||||||    
T  26342271 attggagcatagccatgaga 26342290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 26848664 - 26848592
Alignment:
Q  11 tgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaac 83  Q
    |||||||| |||||||||||||||||  ||||||| ||||||| |||||| || |||||||| ||||| ||||    
T  26848664 tgaagatccttgtcatcaatgaaggttcggattccattgtcagaaagagctttatagagattaccagtgaaac 26848592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 153
Target Start/End: Complemental strand, 28325491 - 28325343
Alignment:
Q  5 cctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatgcccc 104  Q
    |||| |||||| || |||||||||||||||||| | |||| |||   |  |||| | ||||||||||| ||||||||||| |  ||||||||| | || |    
T  28325491 cctcgttgaaggtctttgtcatcaatgaaggtacgaattctcttcctacaaagatctttgtagagatttccagtaaaaccataacgagtgtcactacctc 28325392  T
Q  105 taaaactgaggaacacttggtaagtgaatgtataggaaaatgaagagga 153  Q
    ||||||| |||||||| |  || ||||||  ||||||||| ||||||||    
T  28325391 taaaactaaggaacacgtcataggtgaatccataggaaaaggaagagga 28325343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 27214427 - 27214336
Alignment:
Q  5 cctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtc 96  Q
    ||||| ||||| || |||||||||||||||||  ||||||| ||||||  |||||| || |||||||| || || |||||||| ||||||||    
T  27214427 cctctctgaagctccttgtcatcaatgaaggttcggattcctttgtcacaaagagctttatagagattaccggtgaaaccgtgtcgagtgtc 27214336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 27234801 - 27234892
Alignment:
Q  5 cctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtc 96  Q
    ||||| ||||| || |||||||||||||||||  ||||||| ||||||  |||||| || |||||||| || || |||||||| ||||||||    
T  27234801 cctctctgaagctccttgtcatcaatgaaggttcggattcctttgtcacaaagagctttatagagattaccggtgaaaccgtgtcgagtgtc 27234892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 28234578 - 28234459
Alignment:
Q  1 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatg 100  Q
    |||||||| |||||| ||  |||||||||||||||| ||||||||||||| |  ||||||  | ||||||||  | |||||||| |  ||||||||| |     
T  28234578 atctcctccttgaagctccctgtcatcaatgaaggtgtggattcccttgtgacaaagagctctatagagattttcggtaaaaccatagcgagtgtcacta 28234479  T
Q  101 cccctaaaactgaggaacac 120  Q
    || |||||||| ||||||||    
T  28234478 cctctaaaactaaggaacac 28234459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 27665309 - 27665358
Alignment:
Q  20 ttgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagag 69  Q
    ||||||||||||||||| |||||||| ||||||| ||||||||| |||||    
T  27665309 ttgtcatcaatgaaggtgtggattcctttgtcagaaagagccttatagag 27665358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 177
Target Start/End: Original strand, 26018770 - 26018836
Alignment:
Q  111 tgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccat 177  Q
    |||||||||||||||| |||| |  ||||||||| || |||| ||| ||||||||||| ||||||||    
T  26018770 tgaggaacacttggtatgtgagtccataggaaaaggatgaggtagacgaaggtgattgaatagccat 26018836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 177
Target Start/End: Original strand, 26139474 - 26139540
Alignment:
Q  111 tgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccat 177  Q
    |||||||||||||||| |||| |  ||||||||| || |||| ||||||||||||||| ||| ||||    
T  26139474 tgaggaacacttggtatgtgagtccataggaaaaggatgaggtagaggaaggtgattgaataaccat 26139540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 25071654 - 25071589
Alignment:
Q  20 ttgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccg 85  Q
    ||||||||||| ||||| |||||||| ||||||| |||||| || || ||||| || |||||||||    
T  25071654 ttgtcatcaataaaggtgtggattcctttgtcagaaagagctttataaagattaccggtaaaaccg 25071589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 28226902 - 28226845
Alignment:
Q  63 tgtagagattgccagtaaaaccgtgccgagtgtcaatgcccctaaaactgaggaacac 120  Q
    |||||||||| ||||||||||| |  ||||||||||| || |||||||| ||||||||    
T  28226902 tgtagagatttccagtaaaaccataacgagtgtcaatacctctaaaactaaggaacac 28226845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 28242798 - 28242702
Alignment:
Q  21 tgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatgcccctaaaactgaggaa 117  Q
    ||||||||||||||||  | |||||||| | |  |||| | ||||||||||| ||||||||||| |  ||||||||| | || |||||||| |||||    
T  28242798 tgtcatcaatgaaggtgcgaattcccttcttacaaagatctttgtagagatttccagtaaaaccataacgagtgtcactacctctaaaactaaggaa 28242702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 3595 - 3844
Alignment:
Q  1 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||    
T  3595 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtg 3694  T
Q  101 cccctaaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattgaaagaaattggatga 200  Q
    ||||||||||| |||||||||||||||||||||  |||||||||||||||||| |||||||||||||| |||||||||| |||||| |||||| ||||||    
T  3695 cccctaaaactaaggaacacttggtaagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatagccatgacaattgagagaaataggatga 3794  T
Q  201 aaaaagagtctgggaatgcagaatatgaatgaataagtttttgtggtctgt 251  Q
    ||||||||| || ||||||||||||||||||  ||| ||||||||||||||    
T  3795 aaaaagagtttgagaatgcagaatatgaatg-gtaaatttttgtggtctgt 3844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 14528 - 14780
Alignment:
Q  1 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||    
T  14528 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtg 14627  T
Q  101 cccctaaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattgaaagaaattggatga 200  Q
    ||||||||||||| |||||||||||||||||||  |||||||||||||| ||| |||||||||||||| ||||||||||||||||| |||||| |||||     
T  14628 cccctaaaactgatgaacacttggtaagtgaatccataggaaaatgaagtggatgaggaaggtgattgtatagccatgagaattgagagaaataggatg- 14726  T
Q  201 aaaaagagtctgggaatgcagaatatgaatgaataagtttttgtggtctgtgatg 255  Q
    ||||||||| || ||||||||||||||||||| |||  ||||||| |||||||||    
T  14727 aaaaagagtttgagaatgcagaatatgaatgagtaa-attttgtgttctgtgatg 14780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 88 - 255
Target Start/End: Original strand, 8061 - 8228
Alignment:
Q  88 ccgagtgtcaatgcccctaaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattgaa 187  Q
    |||||||||| |||||||||||||||||||||||||||||||||||  || ||| ||||||||||| |||||||||||||| |||||||||||||||||     
T  8061 ccgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccatgggagaatgaagaggatgaggaaggtgattgtatagccatgagaattgag 8160  T
Q  188 agaaattggatgaaaaaagagtctgggaatgcagaatatgaatgaataagtttttgtggtctgtgatg 255  Q
    |||||| ||||||||||||||| || ||||||||||||||||||| | | |||||||| |||||||||    
T  8161 agaaataggatgaaaaaagagtttgagaatgcagaatatgaatgagtgaatttttgtgttctgtgatg 8228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 90 - 337
Alignment:
Q  1 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatg 100  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||    
T  90 atctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtg 189  T
Q  101 cccctaaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattgaaagaaattggatga 200  Q
    ||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||    
T  190 cccctaaaactaaggaacacttggtaagtgaatgcatatgaaaatgaagaggaagagggaggtgattgcatagccatgagaattgagagaaattagatga 289  T
Q  201 aaaaagagtctgggaatgcagaatatgaatgaataagtttttgtggtctgtgatg 255  Q
    ||||||||| ||       ||||||||||||| ||||||||||||||||||||||    
T  290 aaaaagagtttg-------agaatatgaatgagtaagtttttgtggtctgtgatg 337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 7539 - 7292
Alignment:
Q  1 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatg 100  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||    
T  7539 atctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtg 7440  T
Q  101 cccctaaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattgaaagaaattggatga 200  Q
    ||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||    
T  7439 cccctaaaactaaggaacacttggtaagtgaatgcatatgaaaatgaagaggaagagggaggtgattgcatagccatgagaattgagagaaattagatga 7340  T
Q  201 aaaaagagtctgggaatgcagaatatgaatgaataagtttttgtggtctgtgatg 255  Q
    ||||||||| ||       ||||||||||||| ||||||||||||||||||||||    
T  7339 aaaaagagtttg-------agaatatgaatgagtaagtttttgtggtctgtgatg 7292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 22 - 250
Target Start/End: Original strand, 18699581 - 18699807
Alignment:
Q  22 gtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatgcccctaaaactgaggaacact 121  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||  ||||||||| ||||||| || ||||||||||||    
T  18699581 gtcatcaatgaaggtgtggattcccttgtcagtaagagctttgtagagatggccagtaaaaccgtcacgagtgtcagtgcccctgaagctgaggaacact 18699680  T
Q  122 tggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattgaaagaaattggatgaaaaaagagtctgggaatgcag 221  Q
    ||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | |||||||||||||| || ||||||||    
T  18699681 tggtaagtgaatcgataggaaaatgaagaggatgaggaaggtgattgcatagccatgagaattgagagaaactagatgaaaaaagagtttgagaatgcag 18699780  T
Q  222 aatatgaatgaataagtttttgtggtctg 250  Q
    |||||||  |  |||||||||||||||||    
T  18699781 aatatga--ggttaagtttttgtggtctg 18699807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 5 - 255
Target Start/End: Original strand, 18731668 - 18731916
Alignment:
Q  5 cctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatgcccc 104  Q
    |||||||| || |||  ||||||||||||||| |||||||||||||||||||||||  ||||||||| ||||||||||||||  ||||||||| ||||||    
T  18731668 cctctttgcaggtcacggtcatcaatgaaggtgtggattcccttgtcagtaagagctctgtagagatggccagtaaaaccgtcacgagtgtcactgcccc 18731767  T
Q  105 taaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattgaaagaaattggatgaaaaa 204  Q
    | || ||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||| ||| || ||||| |||||||||||    
T  18731768 tgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagaggatgaggaaggtgattgcatagccatgaaaatcgagagaaactggatgaaaaa 18731867  T
Q  205 agagtctgggaatgcagaatatgaatgaataagtttttgtggtctgtgatg 255  Q
    ||||| || |||||||||||||||  |  |||||||||||||| |||||||    
T  18731868 agagtttgagaatgcagaatatga--gtttaagtttttgtggtatgtgatg 18731916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 22 - 255
Target Start/End: Original strand, 18655658 - 18655889
Alignment:
Q  22 gtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatgcccctaaaactgaggaacact 121  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||  |||||||||||||  ||||||||| ||||||| || ||||||||||||    
T  18655658 gtcatcaatgaaggtgtggattcccttgtcagtaagagctttgtagagatgcccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacact 18655757  T
Q  122 tggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattgaaagaaattggatgaaaaaagagtctgggaatgcag 221  Q
    ||||||||||||  |||||||||||||||||| ||||||||||||||| ||||||||| |||||| ||||| |||||||||||||||| || ||||||||    
T  18655758 tggtaagtgaatcgataggaaaatgaagaggatgaggaaggtgattgcctagccatgaaaattgagagaaactggatgaaaaaagagtttgagaatgcag 18655857  T
Q  222 aatatgaatgaataagtttttgtggtctgtgatg 255  Q
    |||||||  |  |||||||||||||| |||||||    
T  18655858 aatatga--gtttaagtttttgtggtatgtgatg 18655889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 5 - 255
Target Start/End: Original strand, 18679731 - 18679979
Alignment:
Q  5 cctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatgcccc 104  Q
    |||||||| || |||  ||||||||||||||| |||||||| |||||||||||||||||||||||||  |||||||||||||  ||||||||| ||||||    
T  18679731 cctctttgcaggtcacggtcatcaatgaaggtgtggattcctttgtcagtaagagccttgtagagatgaccagtaaaaccgttacgagtgtcactgcccc 18679830  T
Q  105 taaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattgaaagaaattggatgaaaaa 204  Q
    | || ||||||||||||||||||||||||  |||||||||||||||| | ||||||||||||||||||||||||| ||| || ||||| |||||||||||    
T  18679831 tgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagagaatgaggaaggtgattgcatagccatgaaaatagagagaaactggatgaaaaa 18679930  T
Q  205 agagtctgggaatgcagaatatgaatgaataagtttttgtggtctgtgatg 255  Q
    ||||| || |||||||||||||||  |  |||||||||||||| |||||||    
T  18679931 agagtttgagaatgcagaatatga--gtttaagtttttgtggtatgtgatg 18679979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 5 - 186
Target Start/End: Original strand, 18724249 - 18724430
Alignment:
Q  5 cctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatgcccc 104  Q
    |||||||| || |||  ||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||  ||||||||| ||||||    
T  18724249 cctctttgcaggtcacggtcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatgaccagtaaaaccgttacgagtgtcactgcccc 18724348  T
Q  105 taaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattga 186  Q
    | || ||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18724349 tgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagaggatgaggaaggtgattgcatagccatgagaattga 18724430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 17989226 - 17989454
Alignment:
Q  17 tcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatgcccctaaaactgagga 116  Q
    |||| |||||||  ||||||| | |||||||||||| ||||||||||  |||||||||| || ||||||| |||||||||  ||||| || || ||||||    
T  17989226 tcatcgtcatcatggaaggtacgaattcccttgtcaataagagccttcaagagattgccggtgaaaccgtaccgagtgtcggtgcccttacaaatgagga 17989325  T
Q  117 acacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattgaaagaaattggatgaaaaaagagtctgggaa 216  Q
    |||| | |||| |||||| ||||||||||||||||||| || ||||| ||||||| |||||||||||||| ||||||  ||||  | |||||| || |||    
T  17989326 acacatcgtaactgaatgcataggaaaatgaagaggaatagaaaggtaattgcatggccatgagaattgagagaaataagatg--agaagagtttgagaa 17989423  T
Q  217 tgcagaatatgaatgaataagtttttgtggt 247  Q
    ||||||||||||||||  | |||||||||||    
T  17989424 tgcagaatatgaatgaggatgtttttgtggt 17989454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 18073763 - 18073535
Alignment:
Q  17 tcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatgcccctaaaactgagga 116  Q
    |||| |||||||  ||||||| | |||||||||||| ||||||||||  |||||||||| || ||||||| |||||||||  ||||| || || ||||||    
T  18073763 tcatcgtcatcatggaaggtacgaattcccttgtcaataagagccttcaagagattgccggtgaaaccgtaccgagtgtcggtgcccttacaaatgagga 18073664  T
Q  117 acacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattgaaagaaattggatgaaaaaagagtctgggaa 216  Q
    |||| | |||| |||||| ||||||||||||||||||| || ||||| ||||||| |||||||||||||| ||||||  ||||  | |||||| || |||    
T  18073663 acacatcgtaactgaatgcataggaaaatgaagaggaatagaaaggtaattgcatggccatgagaattgagagaaataagatg--agaagagtttgagaa 18073566  T
Q  217 tgcagaatatgaatgaataagtttttgtggt 247  Q
    ||||||||||||||||  | |||||||||||    
T  18073565 tgcagaatatgaatgaggatgtttttgtggt 18073535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 5091147 - 5091237
Alignment:
Q  21 tgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatgcccctaaaact 111  Q
    |||||||||||||||| || ||||||||| ||   ||||| |  |||||||| |||||||||||||  ||||||||  |||| ||||||||    
T  5091147 tgtcatcaatgaaggtgtgaattcccttgacacgtagagcttcatagagatttccagtaaaaccgtaacgagtgtcggtgcctctaaaact 5091237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 9e-48; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 2 - 214
Target Start/End: Original strand, 28164523 - 28164735
Alignment:
Q  2 tctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatgc 101  Q
    |||||||| | |||||||   ||||||||||| || || |||||||||||   ||| ||||| ||||||| |||||| |||||||  ||||||||| |||    
T  28164523 tctcctctctcaagatcacaatcatcaatgaatgtgtgaattcccttgtcgtcaagggccttatagagatggccagtgaaaccgtcacgagtgtcactgc 28164622  T
Q  102 ccctaaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattgaaagaaattggatgaa 201  Q
    ||||||||||||||||||||||||| ||||||  |||||||| |||||||||||||||| | ||| | ||||||||||||||||| |||||||||||||     
T  28164623 ccctaaaactgaggaacacttggtatgtgaatccataggaaattgaagaggaagaggaatgcgatcgtatagccatgagaattgacagaaattggatgag 28164722  T
Q  202 aaaagagtctggg 214  Q
    |||||||| ||||    
T  28164723 aaaagagtttggg 28164735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 23 - 209
Target Start/End: Original strand, 28127862 - 28128042
Alignment:
Q  23 tcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatgcccctaaaactgaggaacactt 122  Q
    ||||||||||| || |||||||||||||||  ||| ||||||||||||| |||||| |||||||  ||||||||| ||||||| || |||||||||||||    
T  28127862 tcatcaatgaatgtgtggattcccttgtcataaagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaacactt 28127961  T
Q  123 ggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattgaaagaaattggatgaaaaaagagt 209  Q
    |||| ||||||  |||||||| |      ||||||||| ||||||||||||||||||||||||| | ||||||||||| ||||||||    
T  28127962 ggtatgtgaatccataggaaatt------gaagaggaatgtgattgcatagccatgagaattgacaaaaattggatgagaaaagagt 28128042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 194
Target Start/End: Original strand, 268521 - 268711
Alignment:
Q  5 cctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatgcccc 104  Q
    ||||||||||| |||   |||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||| |  |||||||||  ||| |    
T  268521 cctctttgaagttcacgatcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccaataaaaccctcacgagtgtcaccgcctc 268620  T
Q  105 taaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattga-aagaaatt 194  Q
    | ||  ||||||| || ||||| |  |||  ||| || | |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  268621 tgaagttgaggaagacctggtaggcaaatccatatgagattgaagaggaagaggaaggtgattgcatagccatgagaactgagaagaaatt 268711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 29273947 - 29274123
Alignment:
Q  5 cctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatgcccc 104  Q
    ||||||||||| |||   |||||||||||||| |||||||||||||||||||||| ||||||||||| |||| |||||||||  |||||||||  ||| |    
T  29273947 cctctttgaagttcacgatcatcaatgaaggtgtggattcccttgtcagtaagagtcttgtagagatggccaataaaaccgtcacgagtgtcaccgcctc 29274046  T
Q  105 taaaactgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgaga 181  Q
    ||||  ||||||| || ||||||||||||  ||| || | |||||||||||||||||||||||||||||||||||||    
T  29274047 taaagttgaggaagacctggtaagtgaatccatatgagattgaagaggaagaggaaggtgattgcatagccatgaga 29274123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 31903862 - 31903733
Alignment:
Q  4 tcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatgccc 103  Q
    |||||||||||| || |  || ||||| ||||| ||||||||||| |||  |||||| ||||||||||| ||||||||||| |  |||||||| | |||     
T  31903862 tcctctttgaagttcttcatcgtcaataaaggtgtggattcccttatcataaagagctttgtagagatttccagtaaaaccatagcgagtgtctaagcct 31903763  T
Q  104 ctaaaactgaggaacacttggtaagtgaat 133  Q
    ||||| ||||||||||| | ||| ||||||    
T  31903762 ctaaagctgaggaacacatcgtaggtgaat 31903733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 59571 - 59343
Alignment:
Q  17 tcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatgcccctaaaactgagga 116  Q
    |||| |||||||  ||||||| | |||||||||||| ||||||||||  |||||||||| || ||||||| |||||||||  ||||| || || ||||||    
T  59571 tcatcgtcatcatggaaggtacgaattcccttgtcaataagagccttcaagagattgccggtgaaaccgtaccgagtgtcggtgcccttacaaatgagga 59472  T
Q  117 acacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccatgagaattgaaagaaattggatgaaaaaagagtctgggaa 216  Q
    |||| | |||| |||||| ||||||||||||||||||| || ||||| ||||||| |||||||||||||| ||||||  ||||  | |||||| || |||    
T  59471 acacatcgtaactgaatgcataggaaaatgaagaggaatagaaaggtaattgcatggccatgagaattgagagaaataagatg--agaagagtttgagaa 59374  T
Q  217 tgcagaatatgaatgaataagtttttgtggt 247  Q
    ||||||||||||||||  | |||||||||||    
T  59373 tgcagaatatgaatgaggatgtttttgtggt 59343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 153
Target Start/End: Complemental strand, 116806 - 116658
Alignment:
Q  5 cctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatgcccc 104  Q
    |||| |||||| || |||||||||||||||||| | |||| |||   |  |||| | ||||||||||| ||||||||||| |  ||||||||| | || |    
T  116806 cctcgttgaaggtctttgtcatcaatgaaggtacgaattctcttcctacaaagatctttgtagagatttccagtaaaaccataacgagtgtcactacctc 116707  T
Q  105 taaaactgaggaacacttggtaagtgaatgtataggaaaatgaagagga 153  Q
    ||||||| |||||||| |  || ||||||  ||||||||| ||||||||    
T  116706 taaaactaaggaacacgtcataggtgaatccataggaaaaggaagagga 116658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 34739 - 34620
Alignment:
Q  1 atctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatg 100  Q
    |||||||| |||||| ||  |||||||||||||||| ||||||||||||| |  ||||||  | ||||||||  | |||||||| |  ||||||||| |     
T  34739 atctcctccttgaagctccctgtcatcaatgaaggtgtggattcccttgtgacaaagagctctatagagattttcggtaaaaccatagcgagtgtcacta 34640  T
Q  101 cccctaaaactgaggaacac 120  Q
    || |||||||| ||||||||    
T  34639 cctctaaaactaaggaacac 34620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 27400 - 27343
Alignment:
Q  63 tgtagagattgccagtaaaaccgtgccgagtgtcaatgcccctaaaactgaggaacac 120  Q
    |||||||||| ||||||||||| |  ||||||||||| || |||||||| ||||||||    
T  27400 tgtagagatttccagtaaaaccataacgagtgtcaatacctctaaaactaaggaacac 27343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 42960 - 42864
Alignment:
Q  21 tgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatgcccctaaaactgaggaa 117  Q
    ||||||||||||||||  | |||||||| | |  |||| | ||||||||||| ||||||||||| |  ||||||||| | || |||||||| |||||    
T  42960 tgtcatcaatgaaggtgcgaattcccttcttacaaagatctttgtagagatttccagtaaaaccataacgagtgtcactacctctaaaactaaggaa 42864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 58475 - 58607
Alignment:
Q  21 tgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaaccgtgccgagtgtcaatgcccctaaaactgaggaacac 120  Q
    ||||||| ||||||||  ||||||||||||||  ||||||  |||||||||| ||||||||||| |  |||||||||   || ||||| || ||||||||    
T  58475 tgtcatccatgaaggttcggattcccttgtcacaaagagctctgtagagatttccagtaaaaccatagcgagtgtcacaacctctaaagctaaggaacac 58574  T
Q  121 ttggtaagtgaatgtataggaaaatgaagagga 153  Q
     || || ||||||  |||||| || ||||||||    
T  58575 gtgataggtgaatccataggagaaggaagagga 58607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 5982 - 5916
Alignment:
Q  111 tgaggaacacttggtaagtgaatgtataggaaaatgaagaggaagaggaaggtgattgcatagccat 177  Q
    |||||||||||||||| |||| |  ||||||||| || |||| ||||||||||||||| ||| ||||    
T  5982 tgaggaacacttggtatgtgagtccataggaaaaggatgaggtagaggaaggtgattgaataaccat 5916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 16689021 - 16688944
Alignment:
Q  5 cctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccagtaaaa 82  Q
    ||||| ||||| || |||||||||||||||  | ||||||||||||||   ||||| ||||| ||||| |||||||||    
T  16689021 cctctctgaagttccttgtcatcaatgaagacacggattcccttgtcacatagagctttgtacagattaccagtaaaa 16688944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University