View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17427_low_25 (Length: 235)

Name: NF17427_low_25
Description: NF17427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17427_low_25
NF17427_low_25
[»] chr1 (4 HSPs)
chr1 (1-221)||(5054225-5054443)
chr1 (1-53)||(46446005-46446057)
chr1 (153-221)||(46672271-46672339)
chr1 (1-53)||(46672110-46672162)
[»] chr8 (3 HSPs)
chr8 (1-221)||(9841821-9842047)
chr8 (153-199)||(9902793-9902839)
chr8 (153-220)||(9860468-9860535)
[»] chr5 (9 HSPs)
chr5 (144-221)||(39576195-39576272)
chr5 (153-221)||(39572189-39572257)
chr5 (1-71)||(4100474-4100544)
chr5 (1-74)||(2326371-2326444)
chr5 (1-116)||(39572300-39572418)
chr5 (153-199)||(2326523-2326569)
chr5 (153-198)||(3561698-3561743)
chr5 (1-117)||(4146454-4146573)
chr5 (1-53)||(39576372-39576424)
[»] chr6 (1 HSPs)
chr6 (165-220)||(112829-112884)
[»] chr3 (2 HSPs)
chr3 (153-200)||(49385878-49385925)
chr3 (157-221)||(7256674-7256738)


Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5054225 - 5054443
Alignment:
Q  1 cccatctcatgataatgagaccattttcccgtatcaaaatccaaaatgtagatctgaaatgttgtataaaaatctttatgcgcaatacaacaaaagcgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5054225 cccatctcatgataatgagaccattttcccgtatcaaaatccaaaatatagatctgaaatgttgtataaaaatctttatgcgcaatacaagaaaagcgat 5054324  T
Q  101 ttcccatccataaaaatcttgcaacatgtagaatcgttatagagggaaataaatattctcgtacaataatttccttgtcaacatccatcacaatcacttt 200  Q
    |||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5054325 ttcccatccataaaaatcttgcaacatgtagaatcgttgtaga--gaaataaatattctcgtacaataatttccttgtcaacatccatcacaatcacttt 5054422  T
Q  201 atcatttgttatccaataaag 221  Q
    |||||||||||||||||||||    
T  5054423 atcatttgttatccaataaag 5054443  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 46446057 - 46446005
Alignment:
Q  1 cccatctcatgataatgagaccattttcccgtatcaaaatccaaaatgtagat 53  Q
    ||||||||||||||| |||||||||  |||| |||||||||||||||||||||    
T  46446057 cccatctcatgataaagagaccattcccccgaatcaaaatccaaaatgtagat 46446005  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 46672271 - 46672339
Alignment:
Q  153 atattctcgtacaataatttccttgtcaacatccatcacaatcactttatcatttgttatccaataaag 221  Q
    |||||||| ||||||||||||  | ||||||||||||||||| |||| |||||||||||| || |||||    
T  46672271 atattctcatacaataatttctctatcaacatccatcacaattacttcatcatttgttattcagtaaag 46672339  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 46672110 - 46672162
Alignment:
Q  1 cccatctcatgataatgagaccattttcccgtatcaaaatccaaaatgtagat 53  Q
    |||||| |||||||  ||||||||||||| | |||||||||||||||||||||    
T  46672110 cccatcgcatgatagagagaccattttcctgaatcaaaatccaaaatgtagat 46672162  T

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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 9842047 - 9841821
Alignment:
Q  1 cccatctcatgataatgagaccattttcccgtatcaaaatccaaaatgtagatctgaaatgttgtataaaaatctttatgcgcaatacaacaaaagcgat 100  Q
    ||||||||||||| | ||||||||||||| | ||||||||||| ||||||||| ||| ||||  |||||  |||||||  |||||| ||| ||| |||||    
T  9842047 cccatctcatgatgaagagaccattttcctgaatcaaaatccagaatgtagatttgatatgtactataagtatctttagtcgcaatgcaagaaaggcgat 9841948  T
Q  101 ttcccatccataaaaatcttgcaa------catgtagaatcgttatagagggaaataaatattctcgtacaataatttccttgtcaacatccatcacaat 194  Q
    ||||||||||||||| | | ||||      ||    | ||  || ||||||||| |  |||||||||||||||| |||||||||||||||||||||||||    
T  9841947 ttcccatccataaaagtatcgcaagcggaccaaaacgcatatttctagagggaagtggatattctcgtacaatagtttccttgtcaacatccatcacaat 9841848  T
Q  195 cactttatcatttgttatccaataaag 221  Q
    |||||| |||| ||||||||| |||||    
T  9841847 cactttgtcatatgttatccagtaaag 9841821  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 9902839 - 9902793
Alignment:
Q  153 atattctcgtacaataatttccttgtcaacatccatcacaatcactt 199  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  9902839 atattctcgtagaataatttccttgtcaacatccatcacaatcactt 9902793  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 9860535 - 9860468
Alignment:
Q  153 atattctcgtacaataatttccttgtcaacatccatcacaatcactttatcatttgttatccaataaa 220  Q
    ||||||||||| |||||||| | ||||||||||||| ||||||||||  |  ||||||||||||||||    
T  9860535 atattctcgtataataatttgcctgtcaacatccatgacaatcacttccttttttgttatccaataaa 9860468  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 39576272 - 39576195
Alignment:
Q  144 gggaaataaatattctcgtacaataatttccttgtcaacatccatcacaatcactttatcatttgttatccaataaag 221  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||| |||||    
T  39576272 gggaaatgaatattctcgtacaataatttccttatcaacatccatcacaatcacttcctcatttgttatccagtaaag 39576195  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 39572257 - 39572189
Alignment:
Q  153 atattctcgtacaataatttccttgtcaacatccatcacaatcactttatcatttgttatccaataaag 221  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||    
T  39572257 atattctcgtacaataatttccttatcaacatccatcacaatcacttcctcatttgttatccaataaag 39572189  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 4100474 - 4100544
Alignment:
Q  1 cccatctcatgataatgagaccattttcccgtatcaaaatccaaaatgtagatctgaaatgttgtataaaa 71  Q
    ||||||||||||||| |||||||||||||    |||||||||||||||||||| ||||||||| |||||||    
T  4100474 cccatctcatgataaagagaccattttcctaactcaaaatccaaaatgtagatttgaaatgttctataaaa 4100544  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 2326371 - 2326444
Alignment:
Q  1 cccatctcatgataatgagaccattttcccgtatcaaaatccaaaatgtagatctgaaatgttgtataaaaatc 74  Q
    ||||||||||||||| ||||| ||||||| | |||||||| |||||||||||| ||||||||| ||| ||||||    
T  2326371 cccatctcatgataaagagacaattttcctgaatcaaaattcaaaatgtagatttgaaatgttctattaaaatc 2326444  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 39572418 - 39572300
Alignment:
Q  1 cccatctcatgataatgagaccattttcccgtatcaaaatccaaaatgtagatctgaaatgttgtataaaa---atctttatgcgcaatacaacaaaagc 97  Q
    ||||||||||||||| ||||||||||||  | |||||||||||||||||||||  || || || | | |||   |||||||| | |||| ||| ||||||    
T  39572418 cccatctcatgataaggagaccattttcttgaatcaaaatccaaaatgtagattggatatcttttttgaaaatgatctttatacacaatgcaagaaaagc 39572319  T
Q  98 gatttcccatccataaaaa 116  Q
    ||||| |||||||||||||    
T  39572318 gattttccatccataaaaa 39572300  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 2326523 - 2326569
Alignment:
Q  153 atattctcgtacaataatttccttgtcaacatccatcacaatcactt 199  Q
    ||||||||| | |||||||||||||||||||| ||||||||||||||    
T  2326523 atattctcgcataataatttccttgtcaacattcatcacaatcactt 2326569  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 3561698 - 3561743
Alignment:
Q  153 atattctcgtacaataatttccttgtcaacatccatcacaatcact 198  Q
    ||||||||  ||||||| ||||||||||||||||||||||||||||    
T  3561698 atattctctgacaataacttccttgtcaacatccatcacaatcact 3561743  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 4146573 - 4146454
Alignment:
Q  1 cccatctcatgataatgagaccattttcccgtatcaaaatccaaaatgtagatctgaaatgttgtataaaa---atctttatgcgcaatacaacaaaagc 97  Q
    ||||||||||||||| |||||||||||||    |||||||||||||  ||||| ||||||||| || ||||   ||| |||| | |||| ||| ||| |     
T  4146573 cccatctcatgataaagagaccattttcctaactcaaaatccaaaacatagatttgaaatgttctacaaaatgcatcattattcacaatgcaagaaaggt 4146474  T
Q  98 gatttcccatccataaaaat 117  Q
    |||||||||||| |||||||    
T  4146473 gatttcccatccctaaaaat 4146454  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 39576424 - 39576372
Alignment:
Q  1 cccatctcatgataatgagaccattttcccgtatcaaaatccaaaatgtagat 53  Q
    ||||||||||||||| ||||||||| ||| | ||||||||||||| |||||||    
T  39576424 cccatctcatgataaagagaccattctcctgaatcaaaatccaaagtgtagat 39576372  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 220
Target Start/End: Original strand, 112829 - 112884
Alignment:
Q  165 aataatttccttgtcaacatccatcacaatcactttatcatttgttatccaataaa 220  Q
    |||||||||| ||||||||||||||||| |||||  |||  |||||||||||||||    
T  112829 aataatttccctgtcaacatccatcacagtcactccatcccttgttatccaataaa 112884  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 49385925 - 49385878
Alignment:
Q  153 atattctcgtacaataatttccttgtcaacatccatcacaatcacttt 200  Q
    ||||||| |||||||||||||||| |||| || |||||||||||||||    
T  49385925 atattcttgtacaataatttccttatcaatattcatcacaatcacttt 49385878  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 7256738 - 7256674
Alignment:
Q  157 tctcgtacaataatttccttgtcaacatccatcacaatcactttatcatttgttatccaataaag 221  Q
    ||||| |||||| ||||||| |||||||| ||||||||||||| |||  ||||||| || |||||    
T  7256738 tctcgaacaatagtttccttttcaacatctatcacaatcacttcatccattgttattcagtaaag 7256674  T

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