View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17427_low_26 (Length: 235)
Name: NF17427_low_26
Description: NF17427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17427_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 14 - 169
Target Start/End: Original strand, 23929729 - 23929881
Alignment:
| Q |
14 |
aacctgtgattagtggtcaatgatcttacaaggatgatgatgttcaaaaggcacaagttgtgaaggataccttattggacaataattggtggaaaaaggt |
113 |
Q |
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| T |
23929729 |
aacctgtgattagtgatcaatgatcttacaaggatgatgatgttcaaaaggcacaagttgtgaaggataccttattggacgataattggtggaaaaaggt |
23929828 |
T |
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| Q |
114 |
tgattatacattttcgttcatcagtcttatttacgatgttcttataagaactaaca |
169 |
Q |
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| T |
23929829 |
tgattatacactttcgttcacctgtcctattt---atgttcttagaagaactaaca |
23929881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 23929925 - 23929973
Alignment:
| Q |
173 |
aatgattgaagatgtcaagaagaccaaatataagcataaaagaatatca |
221 |
Q |
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| T |
23929925 |
aatgattgaagatgtcaggaaggccaaatataagcataaaagaatatca |
23929973 |
T |
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Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 15319108 - 15319226
Alignment:
| Q |
19 |
gtgattagtggtcaatgatctt---acaaggatgatgatgttcaaaaggcacaagttgtgaaggataccttattggacaataattggtggaaaaaggttg |
115 |
Q |
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| T |
15319108 |
gtgattagtgatcaatgatcttcttacaagaatgatgatgttcaaaaggcgcaatttgtgaatgatactttgttggacaaaaattggtggaaaaaggttg |
15319207 |
T |
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| Q |
116 |
attatacattttcgttcat |
134 |
Q |
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| T |
15319208 |
attatatactttcgttcat |
15319226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 37 - 121
Target Start/End: Complemental strand, 15318163 - 15318079
Alignment:
| Q |
37 |
tcttacaaggatgatgatgttcaaaaggcacaagttgtgaaggataccttattggacaataattggtggaaaaaggttgattata |
121 |
Q |
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| T |
15318163 |
tcttacaaggatgatgatgttcacaaggtgcaatttgtgaaggatactttgttggacaaatattggtagcaaaaggttgattata |
15318079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 15319305 - 15319353
Alignment:
| Q |
173 |
aatgattgaagatgtcaagaagaccaaatataagcataaaagaatatca |
221 |
Q |
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| T |
15319305 |
aatgattgaagatgttaggaaggccatatataagcatgaaagaatatca |
15319353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 9649910 - 9650057
Alignment:
| Q |
19 |
gtgattagtggtcaatgat---cttacaaggatgatgatgttcaaaaggcacaagttgtgaaggataccttattggacaataattggtggaaaaaggttg |
115 |
Q |
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| T |
9649910 |
gtgattagtgatcaatgattttcttacaaggaa-atgatgttagaaaggcacaatttgtgaaggatactttgctggataataatcggtgaaaaaaaattg |
9650008 |
T |
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| Q |
116 |
attatacattttcgttcatcagtcttatttacgatgttcttataagaac |
164 |
Q |
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| T |
9650009 |
attatatactttcattcactaatcctatttatgatgtttttagaagaac |
9650057 |
T |
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