View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17427_low_30 (Length: 226)
Name: NF17427_low_30
Description: NF17427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17427_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 15083722 - 15083501
Alignment:
| Q |
1 |
ccaaatacaaaatctcacactttctcccaggtgctacccactcccatcctcactcccacagcattaacatgccaaatccaaaaatcttacaca--aaaaa |
98 |
Q |
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| T |
15083722 |
ccaaatacaaaatctcacactttctcccaggtgctacccactcccatcctcactcccacagcattaacatgccaaatccaaaaatcttacacacaaaaaa |
15083623 |
T |
|
| Q |
99 |
ggtaaaatccacagttgaacaagtaaattaacaccagaacaaagtaaaaaaccacttattaaaacccaattctcagacacattgtcaccaaccacaccaa |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
15083622 |
ggtaaaatccacagttgaacaagtaaattaacaccagaacaaagtaaaaaaccacttattaaaacccaattctcagacacattgtccccaaccacaccaa |
15083523 |
T |
|
| Q |
199 |
atcaatgatcaaaccaaaattc |
220 |
Q |
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|||||||||||||||||||||| |
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| T |
15083522 |
atcaatgatcaaaccaaaattc |
15083501 |
T |
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