View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17427_low_34 (Length: 216)

Name: NF17427_low_34
Description: NF17427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17427_low_34
NF17427_low_34
[»] chr2 (14 HSPs)
chr2 (1-202)||(32207071-32207272)
chr2 (1-174)||(32212146-32212319)
chr2 (1-163)||(32147582-32147744)
chr2 (1-162)||(32118491-32118653)
chr2 (1-161)||(32152345-32152500)
chr2 (1-163)||(32174187-32174349)
chr2 (1-139)||(32182297-32182435)
chr2 (1-126)||(32157558-32157683)
chr2 (1-149)||(2821267-2821414)
chr2 (1-163)||(32156411-32156573)
chr2 (1-163)||(32110227-32110389)
chr2 (2-139)||(32153369-32153506)
chr2 (26-103)||(32534228-32534305)
chr2 (100-163)||(32182216-32182279)


Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 32207071 - 32207272
Alignment:
Q  1 taggagaagttcaagttactccagctgaaattgcagaagagctaacaaaggactgtgatgcaacagaatgtctagaagaccttatcaaatccctccaagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32207071 taggagaagttcaagttactccagctgaaattgcagaagagctaacaaaggactgtgatgcaacagaatgtctagaagaccttatcaaatccctccaagc 32207170  T
Q  101 caagaaaatgatcaaggaagacattaataatgaagaaaatgtcaaagaagaacatgaactaggcagctatgaagaagggactgcggcagactccgacaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32207171 caagaaaatgatcaaggaagacattaataatgaagaaaatgtcaaagaagaacatgaactaggcagctatgaagaagggactgcggcagactccgacaca 32207270  T
Q  201 gg 202  Q
    ||    
T  32207271 gg 32207272  T

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Target: chr2; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 32212146 - 32212319
Alignment:
Q  1 taggagaagttcaagttactccagctgaaattgcagaagagctaacaaaggactgtgatgcaacagaatgtctagaagaccttatcaaatccctccaagc 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||   |||||| |||||||| ||| |||||||||||||||||||||||||    
T  32212146 taggagaagttcaagttactcctgctgaaattgcagaagagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctccaagc 32212245  T
Q  101 caagaaaatgatcaaggaagacattaataatgaagaaaatgtcaaagaagaacatgaactaggcagctatgaag 174  Q
    ||||||||| || |||||||| || || |||||||||||| |||||||||||||||||||||| ||||||||||    
T  32212246 caagaaaatcatgaaggaagagataaaaaatgaagaaaatatcaaagaagaacatgaactaggtagctatgaag 32212319  T

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Target: chr2; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 32147744 - 32147582
Alignment:
Q  1 taggagaagttcaagttactccagctgaaattgcagaagagctaacaaaggactgtgatgcaacagaatgtctagaagaccttatcaaatccctccaagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||| ||| ||||||||||||||| |||||||||    
T  32147744 taggagaagttcaagttactccagctgaaattgcagaagagttaacaaaggattgtgatgctacagaatgcctacaagaccttatcaaattcctccaagc 32147645  T
Q  101 caagaaaatgatcaaggaagacattaataatgaagaaaatgtcaaagaagaacatgaactagg 163  Q
    ||||||||||||||||||||| || || | ||||||||||  ||||||||||  |||||||||    
T  32147644 caagaaaatgatcaaggaagagataaagattgaagaaaataacaaagaagaaggtgaactagg 32147582  T

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Target: chr2; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 32118653 - 32118491
Alignment:
Q  1 taggagaagttcaagttactccagctgaaattgcagaagagctaacaaaggactgtgatgcaacagaatgtctagaagaccttatcaaatccctccaagc 100  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||| ||| ||||||||||  |||||||||||||    
T  32118653 taggacaagttcaagttactccagctgaaattgctgaagagctaacgaaggattgtgatgctacagaatgcctacaagaccttattgaatccctccaagc 32118554  T
Q  101 caagaaaatgatcaaggaagacatta-ataatgaagaaaatgtcaaagaagaacatgaactag 162  Q
    ||||||||||||||||||||| || | | |||||||||||| |||||||||||||||||||||    
T  32118553 caagaaaatgatcaaggaagagatgatagaatgaagaaaatatcaaagaagaacatgaactag 32118491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 32152500 - 32152345
Alignment:
Q  1 taggagaagttcaagttactccagctgaaattgcagaagagctaacaaaggactgtgatgcaacagaatgtctagaagaccttatcaaatccctccaagc 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||| |||||     ||||||| |||||||    
T  32152500 taggagaagttcaagttactcctgctgaaattgcagaagagctaacaaaggattgtgatgctacagaatgcctacaagac-----caaatccttccaagc 32152406  T
Q  101 caagaaaatgatcaaggaagacattaataatgaagaaaatgtcaaagaagaacatgaacta 161  Q
    ||||||||||||||||||||||||||| |||||||||| | |||||| |||||||||||||    
T  32152405 caagaaaatgatcaaggaagacattaaaaatgaagaaattatcaaaggagaacatgaacta 32152345  T

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Target: chr2; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 32174349 - 32174187
Alignment:
Q  1 taggagaagttcaagttactccagctgaaattgcagaagagctaacaaaggactgtgatgcaacagaatgtctagaagaccttatcaaatccctccaagc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||| |||||||||| | || |||||||||    
T  32174349 taggagaagttcaagttactccagctgaaattgcagaagagctaaccaaggattgtgatgctacagaatgcctacaagaccttataatattcctccaagc 32174250  T
Q  101 caagaaaatgatcaaggaagacattaataatgaagaaaatgtcaaagaagaacatgaactagg 163  Q
     ||||||||||||||||||||  | || |||||||||||  | |||||||||  |||||||||    
T  32174249 aaagaaaatgatcaaggaagaggtaaaaaatgaagaaaacattaaagaagaaggtgaactagg 32174187  T

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Target: chr2; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 32182435 - 32182297
Alignment:
Q  1 taggagaagttcaagttactccagctgaaattgcagaagagctaacaaaggactgtgatgcaacagaatgtctagaagaccttatcaaatccctccaagc 100  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||| |||||||| ||| ||||||||||||||| ||| |||||    
T  32182435 taggagaagttcaagttactccggctgaaattggagaagagctaacaaaggattgtgatgctacagaatgcctacaagaccttatcaaattcctgcaagc 32182336  T
Q  101 caagaaaatgatcaaggaagacattaataatgaagaaaa 139  Q
    |||||||||||||||||||||  | || |||||||||||    
T  32182335 caagaaaatgatcaaggaagaggtaaagaatgaagaaaa 32182297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 32157683 - 32157558
Alignment:
Q  1 taggagaagttcaagttactccagctgaaattgcagaagagctaacaaaggactgtgatgcaacagaatgtctagaagaccttatcaaatccctccaagc 100  Q
    |||||||||||||||||||||| |||||||||| ||||||||| |||||||| |||||||| |||||||| ||| ||||||||||||||| |||||||||    
T  32157683 taggagaagttcaagttactcctgctgaaattggagaagagctcacaaaggattgtgatgctacagaatgcctacaagaccttatcaaattcctccaagc 32157584  T
Q  101 caagaaaatgatcaaggaagacatta 126  Q
    ||||||||||||||||||||| ||||    
T  32157583 caagaaaatgatcaaggaagagatta 32157558  T

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Target: chr2; HSP #9
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 2821267 - 2821414
Alignment:
Q  1 taggagaagttcaagttactccagctgaaattgcagaagagctaacaaaggactgtgatgcaacagaatgtctagaagaccttatcaaatccctccaagc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||| ||| ||||||||||||||| |||||||||    
T  2821267 taggagaagttcaagttactccagctgaaattgcagaagagctaacaaaggattgtgatgctacaaaatgcctacaagaccttatcaaattcctccaagc 2821366  T
Q  101 caagaaaatgatcaaggaagacattaataatgaagaaaatgtcaaagaa 149  Q
    |||| ||| ||| |||||||| || || |||||||||||  ||||||||    
T  2821367 caag-aaacgatgaaggaagagataaagaatgaagaaaacatcaaagaa 2821414  T

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Target: chr2; HSP #10
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 32156573 - 32156411
Alignment:
Q  1 taggagaagttcaagttactccagctgaaattgcagaagagctaacaaaggactgtgatgcaacagaatgtctagaagaccttatcaaatccctccaagc 100  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||   |||||| |||||||| ||| ||||||||||||||| ||||||||     
T  32156573 taggagaagttcaagttactcctgctgaaattgcagaagagcttacaaaggatgttgatgctacagaatgcctacaagaccttatcaaattcctccaagt 32156474  T
Q  101 caagaaaatgatcaaggaagacattaataatgaagaaaatgtcaaagaagaacatgaactagg 163  Q
     ||||||||||  |||||||| || || || |||||||||||||||||||||  |||||||||    
T  32156473 aaagaaaatgaaaaaggaagagataaagaaggaagaaaatgtcaaagaagaatctgaactagg 32156411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 32110389 - 32110227
Alignment:
Q  1 taggagaagttcaagttactccagctgaaattgcagaagagctaacaaaggactgtgatgcaacagaatgtctagaagaccttatcaaatccctccaagc 100  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||   |||||| ||||||||  || ||||||||||||||| |||||||||    
T  32110389 taggagaagttcaagttactccagctgaaattgcagaagtgttaacaaaggatgttgatgctacagaatgcttacaagaccttatcaaattcctccaagc 32110290  T
Q  101 caagaaaatgatcaaggaagacattaataatgaagaaaatgtcaaagaagaacatgaactagg 163  Q
    |||||||||| || ||||||| | ||| |  |||||||||  |||||||||||| || |||||    
T  32110289 caagaaaatggtccaggaagagagtaagagagaagaaaatagcaaagaagaacaagatctagg 32110227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 2 - 139
Target Start/End: Complemental strand, 32153506 - 32153369
Alignment:
Q  2 aggagaagttcaagttactccagctgaaattgcagaagagctaacaaaggactgtgatgcaacagaatgtctagaagaccttatcaaatccctccaagcc 101  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||   ||||||  ||||||| ||| || |||||||||||| ||||||||||    
T  32153506 aggacaagttcaagttactccagctgaaattgtagaagagctaacaaaggaggttgatgctgcagaatgcctacaataccttatcaaattcctccaagcc 32153407  T
Q  102 aagaaaatgatcaaggaagacattaataatgaagaaaa 139  Q
    |||||||| |||||  | || || || |||||||||||    
T  32153406 aagaaaatcatcaaacatgagataaagaatgaagaaaa 32153369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 32534305 - 32534228
Alignment:
Q  26 tgaaattgcagaagagctaacaaaggactgtgatgcaacagaatgtctagaagaccttatcaaatccctccaagccaa 103  Q
    |||||||| |||| |||||||||||||   |||||| |||||||| ||| ||||||||||||||||||||||||||||    
T  32534305 tgaaattgtagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctccaagccaa 32534228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 32182279 - 32182216
Alignment:
Q  100 ccaagaaaatgatcaaggaagacattaataatgaagaaaatgtcaaagaagaacatgaactagg 163  Q
    |||||||||||||| ||||||| |  || |||||||||||| |||||||||||  |||||||||    
T  32182279 ccaagaaaatgatcgaggaagagacaaagaatgaagaaaatatcaaagaagaaggtgaactagg 32182216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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