View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17427_low_5 (Length: 435)
Name: NF17427_low_5
Description: NF17427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17427_low_5 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 19 - 435
Target Start/End: Complemental strand, 30671371 - 30670952
Alignment:
| Q |
19 |
atagaaccatagagcattacaaatacctatattaataggaatagacagtatattaagacaaagacatagcatttaggacattcaatgtgccaaatatata |
118 |
Q |
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| T |
30671371 |
atagaaccatagagcattacaaatacctatattaataggaatagacagtat--taagacaaagacatagcatttaggacattcaatgtgccaaatatata |
30671274 |
T |
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| Q |
119 |
tagtatatcacacacccttaaatatgccattgaaaaatctacctagctaggtatccaaattcttgttccataaccaatgaaaccaaatcaagagaaattc |
218 |
Q |
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| T |
30671273 |
tagtatatcacacacccttaaatatgccactgaaaaatctacctagttaggtatccaaattcttgttccataaccaatgaaaccaaatcaagagaaattc |
30671174 |
T |
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| Q |
219 |
aaacatatgcaatacaatattcaggcaggttttttatgtgaagtacaagtgtaagctatgaagcccatcattagttaataacagattaag----taatat |
314 |
Q |
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| T |
30671173 |
aaacatatgcaatacaatattcaggcaggttttttatgtgaagtacaagtgtaagctatgaagtccatcattagttaataacagattaagtaattaatat |
30671074 |
T |
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| Q |
315 |
ttgttgatcctaacctgaattaaagg-ttagtggtgtcaaactcactactttgatctaccacttaaattcatggacagagatcaatcttccctcttttgg |
413 |
Q |
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| T |
30671073 |
ttgttggtcctaacctgaattaaaggtttaatggtgtcaaactcactactttgatctaccacttaaattcatggacagagatcaatcttccctcttttgg |
30670974 |
T |
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| Q |
414 |
acaccattatttgcttcacttt |
435 |
Q |
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| T |
30670973 |
acaccattatctgcttcacttt |
30670952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 68 - 164
Target Start/End: Complemental strand, 30718612 - 30718514
Alignment:
| Q |
68 |
atattaagacaaagacatagcatttaggacattcaatgtgccaa-atatatatagta--tatcacacacccttaaatatgccattgaaaaatctacctag |
164 |
Q |
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| T |
30718612 |
atattaagacaaagacataacatttaggacatacaatgtgccaatacatatttaataagtatcactca-ccttaaaaatgctattgaaaaatctacctag |
30718514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 30689208 - 30689167
Alignment:
| Q |
69 |
tattaagacaaagacatagcatttaggacattcaatgtgccaa |
111 |
Q |
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| T |
30689208 |
tattaagacaaagacata-catttaggacatacaatgtgccaa |
30689167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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