View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17427_low_6 (Length: 408)

Name: NF17427_low_6
Description: NF17427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17427_low_6
NF17427_low_6
[»] chr5 (2 HSPs)
chr5 (21-397)||(34671893-34672269)
chr5 (177-263)||(8723071-8723157)
[»] chr8 (3 HSPs)
chr8 (21-262)||(7174464-7174705)
chr8 (48-337)||(45383405-45383695)
chr8 (228-339)||(26382982-26383093)
[»] chr4 (3 HSPs)
chr4 (160-317)||(17202425-17202582)
chr4 (21-84)||(17456534-17456597)
chr4 (252-346)||(17779544-17779638)
[»] chr6 (2 HSPs)
chr6 (51-317)||(1510554-1510820)
chr6 (179-295)||(26905852-26905968)
[»] chr3 (2 HSPs)
chr3 (177-325)||(8969991-8970139)
chr3 (177-263)||(15788404-15788490)
[»] chr2 (4 HSPs)
chr2 (252-346)||(26368778-26368872)
chr2 (179-309)||(34072968-34073098)
chr2 (179-321)||(21086605-21086747)
chr2 (288-329)||(15886344-15886385)
[»] chr1 (3 HSPs)
chr1 (180-262)||(38534311-38534393)
chr1 (180-262)||(38556529-38556611)
chr1 (213-321)||(4166632-4166740)
[»] chr7 (3 HSPs)
chr7 (179-296)||(13016666-13016783)
chr7 (180-296)||(21503374-21503490)
chr7 (179-262)||(5612516-5612599)


Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 21 - 397
Target Start/End: Complemental strand, 34672269 - 34671893
Alignment:
Q  21 aaatccttgaaccccatacctccatgatttttatgaactgtaagcttatcccaagatagccaatgaattcttcttctactactccctccattcccccacc 120  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||| ||||||  |||||||||||||||||||||    
T  34672269 aaatccttgaaccccatacctccatgatttttatgaactctaagcttattacaagatagccaatgaattcctcttctgttactccctccattcccccacc 34672170  T
Q  121 aaatgccgtttatcattttttctatttcgtctacaagtgtggtaggaagcaggaacacactcataacatatgaaggtattgcttgcagcacagattttat 220  Q
    ||| ||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  34672169 aaaagccatttatcattttttctatttggtctacaagtgtggtaggaagaaggaacacactcataacatatgaagatattgcttgcagcacagattctat 34672070  T
Q  221 catcacctctcttccggctttcgacaagcatttactactccaggcattaatctttttccacactctgtctttgatacaattgaaagttgatttcttactt 320  Q
    |||||||| |||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  34672069 catcacctatctttcggctttcgacaagcatttactactctaggcattaatcttttgccacactctgtctttgataaaattgaaagttgatttcttactt 34671970  T
Q  321 cttccgatcattgatggcaaaccaaggtatttaatcgtgcctaaacctgcctgaattcccaagattgaagtaatatt 397  Q
    ||||||||||||||||||||||||||||||||| | ||||||||  ||||||||| |||||||||||||||||||||    
T  34671969 cttccgatcattgatggcaaaccaaggtatttactagtgcctaatactgcctgaactcccaagattgaagtaatatt 34671893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 263
Target Start/End: Complemental strand, 8723157 - 8723071
Alignment:
Q  177 acactcataacatatgaaggtattgcttgcagcacagattttatcatcacctctcttccggctttcgacaagcatttactactccag 263  Q
    |||||||||||||| ||||| || ||||| || |||||||| ||||| || |  ||||| ||||| || ||||||||||||||||||    
T  8723157 acactcataacatacgaagggatagcttggaggacagatttaatcataactttccttcctgctttggataagcatttactactccag 8723071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 21 - 262
Target Start/End: Complemental strand, 7174705 - 7174464
Alignment:
Q  21 aaatccttgaaccccatacctccatgatttttatgaactgtaagcttatcccaagatagccaatgaattcttcttctactactccctccattcccccacc 120  Q
    |||||||| |||||||| || ||||  ||||| || || ||||||||||||||||||||||||||||||| | |||| ||||| ||||| |  |||||||    
T  7174705 aaatccttaaaccccatgcccccatagtttttgtgcacagtaagcttatcccaagatagccaatgaattccttttctcctactacctccgtgtccccacc 7174606  T
Q  121 aaatgccgtttatcattttttctatttcgtctacaagtgtggtaggaagcaggaacacactcataacatatgaaggtattgcttgcagcacagattttat 220  Q
    | | ||| |||| ||| ||||| |||||||| || || |||||||||||||  |||||||||||||  |||||||| ||| | || |  |||||||||||    
T  7174605 agaagccatttaccatcttttcaatttcgtccaccagagtggtaggaagcaaaaacacactcataatgtatgaaggaattacctgtaagacagattttat 7174506  T
Q  221 catcacctctcttccggctttcgacaagcatttactactcca 262  Q
    ||| |||||||  |||||||| || |||||||  ||||||||    
T  7174505 cattacctctcgcccggcttttgataagcattggctactcca 7174464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 48 - 337
Target Start/End: Original strand, 45383405 - 45383695
Alignment:
Q  48 tttttatgaactgtaagcttatcccaagatagccaatgaattcttcttctactactccctccattcccccaccaaatgccgtttatcatttttt-ctatt 146  Q
    |||||||||||  | || ||||||||||||||||||||||| | |||  || |  | || ||||| |||||||||| | | ||||||||||||| | ||     
T  45383405 tttttatgaacaatgagtttatcccaagatagccaatgaatacctctattattgtttccaccatttccccaccaaaaggcatttatcatttttttcaatc 45383504  T
Q  147 tcgtctacaagtgtggtaggaagcaggaacacactcataacatatgaaggtattgcttgcagcacagattttatcatcacctctcttccggctttcgaca 246  Q
    ||||| ||||| || ||||| ||||  || |  ||||||||||| |||||||| ||||| ||  ||||||||||||| |||||||| | |||||| |||     
T  45383505 tcgtcaacaagagtagtaggcagcaaaaatatgctcataacatacgaaggtatggcttgtagagcagattttatcattacctctctgctggctttagacg 45383604  T
Q  247 agcatttactactccaggcattaatctttttccacactctgtctttgatacaattgaaagttgatttcttacttcttccgatcattgatgg 337  Q
    ||||||| ||||||||   ||||||| | | ||| ||||| ||||| ||| | ||||| || | ||| ||| ||||||| ||||| |||||    
T  45383605 agcatttgctactccacaaattaatcctctgccatactctatctttaataaagttgaaggtagcttttttatttcttccaatcatggatgg 45383695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 339
Target Start/End: Original strand, 26382982 - 26383093
Alignment:
Q  228 tctcttccggctttcgacaagcatttactactccaggcattaatctttttccacactctgtctttgatacaattgaaagttgatttcttacttcttccga 327  Q
    |||| ||| ||||| || ||||||||||| ||||| |  |||||||| |||||||| || || || ||  |||| ||||||| |||||| |||||||| |    
T  26382982 tctcgtcctgctttggagaagcatttactgctccatgagttaatcttcttccacaccctatccttaatgaaattaaaagttgctttcttgcttcttccta 26383081  T
Q  328 tcattgatggca 339  Q
    |||| |||||||    
T  26383082 tcatagatggca 26383093  T

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Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 160 - 317
Target Start/End: Original strand, 17202425 - 17202582
Alignment:
Q  160 tggtaggaagcaggaacacactcataacatatgaaggtattgcttgcagcacagattttatcatcacctctcttccggctttcgacaagcatttactact 259  Q
    ||||||| |||| |||||||||||| ||||||||||  |||| ||||| ||||||||||| ||| ||||||||||| |||| | |||| ||||| || ||    
T  17202425 tggtagggagcaagaacacactcatgacatatgaagagattgtttgcaacacagattttagcataacctctcttccagcttgcaacaaacatttgctgct 17202524  T
Q  260 ccaggcattaatctttttccacactctgtctttgatacaattgaaagttgatttctta 317  Q
     |||| ||||||||||| ||||||| ||||||||||| || | | ||||| |||||||    
T  17202525 tcaggaattaatcttttgccacactgtgtctttgataaaactaagagttgctttctta 17202582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 17456597 - 17456534
Alignment:
Q  21 aaatccttgaaccccatacctccatgatttttatgaactgtaagcttatcccaagatagccaat 84  Q
    ||||||||||| ||||||||||||| |||||||||||| | ||| || |||||||| |||||||    
T  17456597 aaatccttgaagcccatacctccatcatttttatgaacagaaagtttttcccaagaaagccaat 17456534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 346
Target Start/End: Original strand, 17779544 - 17779638
Alignment:
Q  252 ttactactccaggcattaatctttttccacactctgtctttgatacaattgaaagttgatttcttacttcttccgatcattgatggcaaaccaag 346  Q
    ||||||||||||| ||||||||||||||| | ||| ||||| ||| |   |||||||| |||||||||||| || ||||| || ||||| |||||    
T  17779544 ttactactccaggaattaatctttttccaaattctatctttaataaacccgaaagttgctttcttacttctaccaatcatagagggcaatccaag 17779638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 51 - 317
Target Start/End: Complemental strand, 1510820 - 1510554
Alignment:
Q  51 ttatgaactgtaagcttatcccaagatagccaatgaattcttcttctactactccctccattcccccaccaaatgccgtttatcattttttctatttcgt 150  Q
    |||||||| || |||||||||||||| ||||| ||||| | ||| |||||||| |||||||| |||||||| | ||| || || ||||| || ||    |    
T  1510820 ttatgaaccgtgagcttatcccaagaaagccagtgaatgcctctgctactactacctccatttccccaccagaagccattgataattttctcaatagaat 1510721  T
Q  151 ctacaagtgtggtaggaagcaggaacacactcataacatatgaaggtattgcttgcagcacagattttatcatcacctctcttccggctttcgacaagca 250  Q
    | | |||  | | ||| |  | ||| | |||||| ||||| || || || ||||||||||||||||| ||||||||||| || || ||||||||||| ||    
T  1510720 caataaggtttgaaggcaataagaaaatactcatgacataagatggaatcgcttgcagcacagatttaatcatcacctccctaccagctttcgacaaaca 1510621  T
Q  251 tttactactccaggcattaatctttttccacactctgtctttgatacaattgaaagttgatttctta 317  Q
    ||| |||||||| | | ||||||||| ||||||||||||||| ||| || | ||||||| |||||||    
T  1510620 tttgctactccacgaactaatcttttgccacactctgtctttaatataactaaaagttgctttctta 1510554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 295
Target Start/End: Complemental strand, 26905968 - 26905852
Alignment:
Q  179 actcataacatatgaaggtattgcttgcagcacagattttatcatcacctctcttccggctttcgacaagcatttactactccaggcattaatctttttc 278  Q
    |||||||||||| ||||| ||||| ||||| |||||||||||||| ||||| |  || ||||| |||||||| || | |||||| | |||||  || | |    
T  26905968 actcataacataagaaggaattgcctgcagaacagattttatcataacctcgcgccctgctttagacaagcactttccactccaagaattaactttatgc 26905869  T
Q  279 cacactctgtctttgat 295  Q
    ||||| | |||||||||    
T  26905868 cacacacagtctttgat 26905852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 177 - 325
Target Start/End: Original strand, 8969991 - 8970139
Alignment:
Q  177 acactcataacatatgaaggtattgcttgcagcacagattttatcatcacctctcttccggctttcgacaagcatttactactccaggcattaatctttt 276  Q
    |||||||||||||| || || || | ||| || |||||||| ||||| ||||| ||||| ||||| ||||| |||||||| ||||||  | ||||||| |    
T  8969991 acactcataacataggatggaatagattgaagaacagatttgatcatgacctcccttcctgctttagacaaacatttactgctccagctactaatcttct 8970090  T
Q  277 tccacactctgtctttgatacaattgaaagttgatttcttacttcttcc 325  Q
     ||||||||| ||||| ||| | ||||| |||| ||| |||||||||||    
T  8970091 gccacactctatctttaataaacttgaaggttgcttttttacttcttcc 8970139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 263
Target Start/End: Complemental strand, 15788490 - 15788404
Alignment:
Q  177 acactcataacatatgaaggtattgcttgcagcacagattttatcatcacctctcttccggctttcgacaagcatttactactccag 263  Q
    |||||||||||||||||||| || ||||| || |||||||| ||||| || || ||||| ||||| || ||||||||||||||||||    
T  15788490 acactcataacatatgaaggaatagcttggaggacagatttaatcataacttcccttcctgctttggataagcatttactactccag 15788404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 252 - 346
Target Start/End: Complemental strand, 26368872 - 26368778
Alignment:
Q  252 ttactactccaggcattaatctttttccacactctgtctttgatacaattgaaagttgatttcttacttcttccgatcattgatggcaaaccaag 346  Q
    ||||||||||||| ||||||||||||||| | ||||||||| ||| | | |||||||| |||||||||||| || ||||| || ||||| |||||    
T  26368872 ttactactccaggaattaatctttttccaaattctgtctttaataaactcgaaagttgctttcttacttctaccaatcatagagggcaatccaag 26368778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 179 - 309
Target Start/End: Original strand, 34072968 - 34073098
Alignment:
Q  179 actcataacatatgaaggtattgcttgcagcacagattttatcatcacctctcttccggctttcgacaagcatttactactccaggcattaatctttttc 278  Q
    |||||| |||||||| || || ||||| || ||| |||| ||||| |||||||| || ||||| ||||| ||||||||||||||     |||| |||| |    
T  34072968 actcatgacatatgatggaatagcttgaagaacatatttgatcatgacctctctacctgctttggacaaacatttactactccaactgctaattttttgc 34073067  T
Q  279 cacactctgtctttgatacaattgaaagttg 309  Q
    ||||||||||| |||||| || |||||||||    
T  34073068 cacactctgtccttgataaaactgaaagttg 34073098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 321
Target Start/End: Original strand, 21086605 - 21086747
Alignment:
Q  179 actcataacatatgaaggtattgcttgcagcacagattttatcatcacctctcttccggctttcgacaagcatttactactccaggcattaatctttttc 278  Q
    |||||||||||| || || || | ||| || || ||||||||||| || || ||||| ||||| ||||| |||||||| |||||   | ||||||| | |    
T  21086605 actcataacataggatggaatagattgaagaaccgattttatcatgacttcccttcctgctttagacaaacatttactgctccaactactaatcttctac 21086704  T
Q  279 cacactctgtctttgatacaattgaaagttgatttcttacttc 321  Q
    |||||||| ||||||||  || |||| |||| ||| |||||||    
T  21086705 cacactctatctttgatgaaactgaaggttgcttttttacttc 21086747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 329
Target Start/End: Complemental strand, 15886385 - 15886344
Alignment:
Q  288 tctttgatacaattgaaagttgatttcttacttcttccgatc 329  Q
    ||||||||| || ||||||||| |||||||||||||||||||    
T  15886385 tctttgataaaactgaaagttgctttcttacttcttccgatc 15886344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 262
Target Start/End: Original strand, 38534311 - 38534393
Alignment:
Q  180 ctcataacatatgaaggtattgcttgcagcacagattttatcatcacctctcttccggctttcgacaagcatttactactcca 262  Q
    ||||||||||| ||||| || ||||| |||||| |||| ||||| |||||||  || ||||| ||||| ||||||||||||||    
T  38534311 ctcataacataggaaggaatagcttgaagcacatatttgatcatgacctctcgacctgctttggacaaacatttactactcca 38534393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 262
Target Start/End: Original strand, 38556529 - 38556611
Alignment:
Q  180 ctcataacatatgaaggtattgcttgcagcacagattttatcatcacctctcttccggctttcgacaagcatttactactcca 262  Q
    ||||||||||| ||||| || ||||| |||||| |||| ||||| |||||||  || ||||| ||||| ||||||||||||||    
T  38556529 ctcataacataggaaggaatagcttgaagcacatatttgatcatgacctctcgacctgctttggacaaacatttactactcca 38556611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 321
Target Start/End: Complemental strand, 4166740 - 4166632
Alignment:
Q  213 gattttatcatcacctctcttccggctttcgacaagcatttactactccaggcattaatctttttccacactctgtctttgatacaattgaaagttgatt 312  Q
    ||||| ||||| ||||| ||||| ||||| ||||||||||| |||||||||  ||| ||||| | ||| ||||| ||||||||  |  |||||||||  |    
T  4166740 gatttgatcatgacctcccttcctgctttagacaagcatttgctactccagctattgatcttctgccatactctatctttgatgaagctgaaagttgcct 4166641  T
Q  313 tcttacttc 321  Q
    |||||||||    
T  4166640 tcttacttc 4166632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 296
Target Start/End: Original strand, 13016666 - 13016783
Alignment:
Q  179 actcataacatatgaaggtattgcttgcagcacagattttatcatcacctctcttccggctttcgacaagcatttactactccaggcattaatctttttc 278  Q
    |||||||||||| ||||| ||||| ||||  |||||||||||||| ||||| |  ||  |||| |||||||| || | |||||| | |||||| || |||    
T  13016666 actcataacataagaaggaattgcctgcaaaacagattttatcataacctcgcgacctactttagacaagcactttccactccaagaattaattttgttc 13016765  T
Q  279 cacactctgtctttgata 296  Q
    ||||| | ||||||||||    
T  13016766 cacacacggtctttgata 13016783  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 296
Target Start/End: Complemental strand, 21503490 - 21503374
Alignment:
Q  180 ctcataacatatgaaggtattgcttgcagcacagattttatcatcacctctcttccggctttcgacaagcatttactactccaggcattaatctttttcc 279  Q
    ||||||| |||||  || |||| ||| || ||| ||||||||| ||| |||| ||| ||||| || |  |||||||||||||| | ||||||||||||||    
T  21503490 ctcataaaatatgttgggattgattgaaggacatattttatcaacacttctcgtccagctttagagagacatttactactccacgaattaatctttttcc 21503391  T
Q  280 acactctgtctttgata 296  Q
    | ||||| || ||||||    
T  21503390 aaactctatccttgata 21503374  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 179 - 262
Target Start/End: Original strand, 5612516 - 5612599
Alignment:
Q  179 actcataacatatgaaggtattgcttgcagcacagattttatcatcacctctcttccggctttcgacaagcatttactactcca 262  Q
    |||||||| ||| || || || ||||| || |||||||| ||||| |||||||| || ||||| ||||| ||||||||||||||    
T  5612516 actcataatataagatggaatagcttgaagaacagatttgatcataacctctctacctgctttggacaaacatttactactcca 5612599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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