View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17428_high_1 (Length: 431)
Name: NF17428_high_1
Description: NF17428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17428_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 99 - 248
Target Start/End: Original strand, 23176692 - 23176847
Alignment:
| Q |
99 |
tcatgagagttgttgacaatggaaggccaacaatttttaattatgagagtcacgtcaaaact------ttctctgctcaaaactttataagaggtccatg |
192 |
Q |
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| T |
23176692 |
tcatgtgagttgttgacaatggaaggccaacaatttttaattatgagagtcacgtcaaaactacgtacttctctgctcaaaacattctgagaggtccatg |
23176791 |
T |
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| Q |
193 |
ttagatggatccataaatatatgttttttaaaatgaacctctcaaaaaattgttca |
248 |
Q |
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| T |
23176792 |
ttagatggatacataaatatatgttttttaaaatgatcctctcaaaaaattgttca |
23176847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 23172878 - 23172957
Alignment:
| Q |
24 |
tcatcagctatataacatgtagatttacagtaccaaaaactgttacttttttattgagttcaattttatcttgattcatg |
103 |
Q |
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| T |
23172878 |
tcatgagctatattacatgtagatttacagtaccaattactgttacttttttattgagttcaattttatcttgattcatg |
23172957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 318 - 363
Target Start/End: Original strand, 23176917 - 23176962
Alignment:
| Q |
318 |
gaccctttatcttttagttatcaacactgttagtttgtcctcgtga |
363 |
Q |
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| T |
23176917 |
gaccctttatcttttagttatcaacactgttagtttgtccttgtga |
23176962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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