View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17428_high_15 (Length: 321)
Name: NF17428_high_15
Description: NF17428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17428_high_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 21 - 292
Target Start/End: Complemental strand, 42330338 - 42330066
Alignment:
| Q |
21 |
acatcatcattttacacattcagttgtcatgaatgttcaaaattaaagaattttcagaaaacaatgttgaaatctaannnnnnnacaatgtttcaaccaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
42330338 |
acatcatcattttacacattcagttgtcattaatgttcaaaatcaaagaattttcagaaaacaatgttgaaatctattttttttacaaggtttcaaccaa |
42330239 |
T |
|
| Q |
121 |
attttgctcaaatggtagggagcaaaacactatttaaccc-ttcttttgtcaggtgtttatggctgattcgttacgctttcaatggtctcagagcaaagt |
219 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42330238 |
attttgctcaaatggtaggaagcaaaacactatttaaccccttcttttgtcaggtgtttatggctgattcgttacgctttcaatggtctcagagcaaagt |
42330139 |
T |
|
| Q |
220 |
accaactagcaacaaatgagaatgacaaaaggctcgacgtgaagcaacaaatgagaacagctgaagacttgag |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
42330138 |
accaactagcaacaaatgagaatgacaaaaggcttgacgtgaagcaacaaatgagaacaactgaagacttgag |
42330066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 278
Target Start/End: Complemental strand, 42328506 - 42328338
Alignment:
| Q |
112 |
ttcaaccaaattttgctcaaatggtagggagcaaaacactatttaacccttctttt--gtcaggtgtttatggctgattcgttacgctttcaatggtctc |
209 |
Q |
| |
|
|||| |||||||| | ||| |||| ||||||||||||||||||||||| || |||| ||||||| |||||| |||||| |||||||||||||| |||| |
|
|
| T |
42328506 |
ttcagccaaatttcgttcatatgggagggagcaaaacactatttaaccttttttttttgtcaggtatttatgactgattagttacgctttcaattatctc |
42328407 |
T |
|
| Q |
210 |
agagcaaagtaccaactagcaacaaatgagaatgacaaaaggctcgacgtgaagcaacaaatgagaaca |
278 |
Q |
| |
|
| | |||| |||||| |||||| ||||||||| | |||||| || ||| ||||||||||||||||| |
|
|
| T |
42328406 |
aaaacaaaataccaagtagcaaaaaatgagaacaatggaaggcttgaggtgtagcaacaaatgagaaca |
42328338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University