View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17428_high_2 (Length: 380)
Name: NF17428_high_2
Description: NF17428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17428_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 351
Target Start/End: Complemental strand, 31541866 - 31541544
Alignment:
| Q |
20 |
gacatcatcacgtgtgaatgatggnnnnnnnctcttagatttttcatgaaaaatttgatgggaaaagtaatcaaattaagtgatctttgatcgcattata |
119 |
Q |
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| T |
31541866 |
gacatcaacacgtgtgaatgatggtttttctctcttagatttttcatgaaaaatttgatgggaaaagcaatcaaattaagtgatctttgatcgcattata |
31541767 |
T |
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| Q |
120 |
ttgttgctctctctttacagcctataatagttgatggtatactctgttaagtgctaacaatagtgctaatgggaacagtagcttgaaaa-gggttcaacc |
218 |
Q |
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| T |
31541766 |
ttgttgttctctctttacagcctataatagttgatggtatactctgttaagtgttaacaataatgctaatgggaacagtggcttgaaaaggggttcaacc |
31541667 |
T |
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| Q |
219 |
tcgttaataattaatttaagatcgtcnnnnnnnnnnnnnnnnnatatatatattggtccatgatccacctctattcatattacaattacaatttacattc |
318 |
Q |
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||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31541666 |
tcgttaataattaatttaagatcatc----------tttttttatatatatattggtccatgatccacctctattcatattacaattgcaatttacattc |
31541577 |
T |
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| Q |
319 |
cttcnnnnnnnnttacaatttacatgaattttt |
351 |
Q |
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|||| ||||||||||||||||||||| |
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| T |
31541576 |
cttcaaaaaaaattacaatttacatgaattttt |
31541544 |
T |
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