View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17428_high_7 (Length: 349)
Name: NF17428_high_7
Description: NF17428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17428_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 7161337 - 7161666
Alignment:
| Q |
1 |
actttgattgtttagagggaactgtagctgcaagggagtggtggtaggggtgatttctgtgaaaacggaggagagagggtaatacttgagtgagggtttg |
100 |
Q |
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| T |
7161337 |
actttgatcgtttagagggaactgtagctgcaagggagtggtggtaggggtgatttctgtgaaaacggaggagagagggtaataattgagtgagggtttg |
7161436 |
T |
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| Q |
101 |
gttttatctgagacaagatggtggcgcgtggttgaaacgcgaaagtggttcttggcgaaatttgaatctgaaataagagatttccaggatttgcagacag |
200 |
Q |
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| T |
7161437 |
gttttatctgagacaagatggtggcgcgtggttgaaacgcgaaagtggttcttggcgaaatttgaatctgaaataagatatttccaggatttgcagaccg |
7161536 |
T |
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| Q |
201 |
atttgagttgcatgagggatttgactggaagcctggaaagaatttcagccacgatgtcaaacgtaagactgggaagaggctgttggtgaagtgaatctcc |
300 |
Q |
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| T |
7161537 |
atttgagttgcatgagggatttgactggaagcctggaaagaatttcagccacgatgtcaaacgtaagactgggaagaggctgttggtgaagtgaatctcc |
7161636 |
T |
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| Q |
301 |
aggagtgatggaggaggaagatgatgatgc |
330 |
Q |
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| T |
7161637 |
aggagtgatggaggaggaagatgatgatgc |
7161666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 115 - 252
Target Start/End: Original strand, 7169393 - 7169530
Alignment:
| Q |
115 |
aagatggtggcgcgtggttgaaacgcgaaagtggttcttggcgaaatttgaatctgaaataagagatttccaggatttgcagacagatttgagttgcatg |
214 |
Q |
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| T |
7169393 |
aagacggtggagcgtggttgacaagcgaaggtgattcttagcgaattttgaatcggagataagagatttccaggacttacagacggattggagttgcatg |
7169492 |
T |
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| Q |
215 |
agggatttgactggaagcctggaaagaatttcagccac |
252 |
Q |
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| T |
7169493 |
agaaacttgactggaagcctggagagaatttccgccac |
7169530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 235
Target Start/End: Original strand, 7175055 - 7175163
Alignment:
| Q |
127 |
cgtggttgaaacgcgaaagtggttcttggcgaaatttgaatctgaaataagagatttccaggatttgcagacagatttgagttgcatgagggatttgact |
226 |
Q |
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| T |
7175055 |
cgtggttgacacgcgaaggttcttcttggtgaaatttgaatctgagatgagagatttccaggatttggagacagatttaaactgtgcgagggatttgact |
7175154 |
T |
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| Q |
227 |
ggaagcctg |
235 |
Q |
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| T |
7175155 |
ggaagcctg |
7175163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 243
Target Start/End: Complemental strand, 11237045 - 11236913
Alignment:
| Q |
111 |
agacaagatggtggcgcgtggttgaaacgcgaaagtggttcttggcgaaatttgaatctgaaataagagatttccaggatttgcagacagatttgagttg |
210 |
Q |
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| T |
11237045 |
agacgagatggaggcgcgtggtggacacgtgaaggtgttttttgatgaatttgggatcggagatgagagatttccaggacttacagacggattggagttg |
11236946 |
T |
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| Q |
211 |
catgagggatttgactggaagcctggaaagaat |
243 |
Q |
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| T |
11236945 |
catgaggtatttgactggcagcctggagagaat |
11236913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 24722641 - 24722586
Alignment:
| Q |
179 |
gatttccaggatttgcagacagatttgagttgcatgagggatttgactggaagcct |
234 |
Q |
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| T |
24722641 |
gatttccaggacttgcagacacatttgaattgcatgagggacttgaccggaagcct |
24722586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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