View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17429_low_1 (Length: 336)

Name: NF17429_low_1
Description: NF17429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17429_low_1
NF17429_low_1
[»] chr4 (10 HSPs)
chr4 (75-318)||(1744060-1744301)
chr4 (132-309)||(1749222-1749400)
chr4 (12-45)||(22698780-22698813)
chr4 (12-45)||(22703110-22703143)
chr4 (12-45)||(22981717-22981750)
chr4 (12-45)||(22990974-22991007)
chr4 (12-45)||(22995304-22995337)
chr4 (12-45)||(28948466-28948499)
chr4 (13-45)||(24036214-24036246)
chr4 (13-45)||(56560559-56560591)
[»] chr7 (1 HSPs)
chr7 (11-45)||(37638754-37638788)
[»] scaffold0009 (1 HSPs)
scaffold0009 (12-45)||(200082-200115)
[»] chr8 (5 HSPs)
chr8 (12-45)||(19648241-19648274)
chr8 (13-45)||(193438-193470)
chr8 (13-45)||(721042-721074)
chr8 (13-45)||(882149-882181)
chr8 (13-45)||(30983223-30983255)
[»] chr5 (3 HSPs)
chr5 (12-45)||(22810031-22810064)
chr5 (13-45)||(27738563-27738595)
chr5 (13-45)||(33232508-33232540)
[»] chr3 (3 HSPs)
chr3 (12-45)||(7011700-7011733)
chr3 (13-45)||(51125383-51125415)
chr3 (13-45)||(52692593-52692625)
[»] chr1 (3 HSPs)
chr1 (12-45)||(4346036-4346069)
chr1 (13-45)||(46407539-46407571)
chr1 (13-45)||(50978939-50978971)
[»] chr2 (3 HSPs)
chr2 (13-45)||(13896050-13896082)
chr2 (13-45)||(14036667-14036699)
chr2 (13-45)||(14380158-14380190)


Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 75 - 318
Target Start/End: Complemental strand, 1744301 - 1744060
Alignment:
Q  75 agaaatcatgtgttgattattcatataaatgactaaaaaatggataaggtttgggctccatgtaagaaaaacacatttaaattatgattgttcatataaa 174  Q
    |||||||||||||||   ||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1744301 agaaatcatgtgttgcacattcacagaaatgactaaaatatggataaggtttgggctccatgtaagaaaaacacatttaaatcatgattgttcatataaa 1744202  T
Q  175 aatattgggcatgtggggttgaggattatttcatggcaccacaccacattgcaaaaagtctcaaaagtgaatattacagatcaccttaacatatgattga 274  Q
    || |||||||||||||||||  ||| ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||      
T  1744201 aaaattgggcatgtggggttatggagtatttcagggcaccacaccacaatgcaaaaagtctcaaaagtgaataatacagatcaccttaatatatgatt-- 1744104  T
Q  275 gatgatgcctacctaacaagcaaaagactttctagaatatcatc 318  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  1744103 gatgatgcctacctaacaagcaaaagactttctagaatctcatc 1744060  T

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Target: chr4; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 132 - 309
Target Start/End: Complemental strand, 1749400 - 1749222
Alignment:
Q  132 ccatgtaagaaaaacacatttaaattatgattgttcatataaaaatattgggcatgtggggttgaggattatttcatggcaccacaccacattgcaaaaa 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||  ||  ||| |||||||||| |||||| |||| ||||||||    
T  1749400 ccatgtaagaaaaacacatttaaattatgattgttcatataaaaaaattgggaatgtggatttatggagtatttcatggaaccacagcacaatgcaaaaa 1749301  T
Q  232 ---gtctcaaaagtgaatattacagatcaccttaacatatgattgagatgatgcctacctaacaagcaaaagactttctag 309  Q
       | ||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||| ||||||||    
T  1749300 aatgcctcaaaagtgaatattacagatcaccttaacatatgact--gatgatgcctacctaacaagcaaaagtctttctag 1749222  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 22698813 - 22698780
Alignment:
Q  12 aattgcaaatctgttcttccatacaccaaaagtt 45  Q
    |||||||||||| |||||||||||||||||||||    
T  22698813 aattgcaaatctattcttccatacaccaaaagtt 22698780  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 22703110 - 22703143
Alignment:
Q  12 aattgcaaatctgttcttccatacaccaaaagtt 45  Q
    |||||||||||| |||||||||||||||||||||    
T  22703110 aattgcaaatctattcttccatacaccaaaagtt 22703143  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 22981717 - 22981750
Alignment:
Q  12 aattgcaaatctgttcttccatacaccaaaagtt 45  Q
    |||||||||||| |||||||||||||||||||||    
T  22981717 aattgcaaatctattcttccatacaccaaaagtt 22981750  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 22991007 - 22990974
Alignment:
Q  12 aattgcaaatctgttcttccatacaccaaaagtt 45  Q
    |||||||||||| |||||||||||||||||||||    
T  22991007 aattgcaaatctattcttccatacaccaaaagtt 22990974  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 22995304 - 22995337
Alignment:
Q  12 aattgcaaatctgttcttccatacaccaaaagtt 45  Q
    |||||||||||| |||||||||||||||||||||    
T  22995304 aattgcaaatctattcttccatacaccaaaagtt 22995337  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 28948466 - 28948499
Alignment:
Q  12 aattgcaaatctgttcttccatacaccaaaagtt 45  Q
    |||||||||||| |||||||||||||||||||||    
T  28948466 aattgcaaatctattcttccatacaccaaaagtt 28948499  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 24036214 - 24036246
Alignment:
Q  13 attgcaaatctgttcttccatacaccaaaagtt 45  Q
    ||||||||||||||||||||||| |||||||||    
T  24036214 attgcaaatctgttcttccataccccaaaagtt 24036246  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 56560591 - 56560559
Alignment:
Q  13 attgcaaatctgttcttccatacaccaaaagtt 45  Q
    ||||||||||||||||||||||| |||||||||    
T  56560591 attgcaaatctgttcttccataccccaaaagtt 56560559  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 37638788 - 37638754
Alignment:
Q  11 aaattgcaaatctgttcttccatacaccaaaagtt 45  Q
    ||||||||||||| |||||||||||||||||||||    
T  37638788 aaattgcaaatctattcttccatacaccaaaagtt 37638754  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 200082 - 200115
Alignment:
Q  12 aattgcaaatctgttcttccatacaccaaaagtt 45  Q
    |||||||||||| |||||||||||||||||||||    
T  200082 aattgcaaatctattcttccatacaccaaaagtt 200115  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 19648274 - 19648241
Alignment:
Q  12 aattgcaaatctgttcttccatacaccaaaagtt 45  Q
    |||||||||||| |||||||||||||||||||||    
T  19648274 aattgcaaatctattcttccatacaccaaaagtt 19648241  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 193470 - 193438
Alignment:
Q  13 attgcaaatctgttcttccatacaccaaaagtt 45  Q
    ||||||||||||||||||||||| |||||||||    
T  193470 attgcaaatctgttcttccataccccaaaagtt 193438  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 721074 - 721042
Alignment:
Q  13 attgcaaatctgttcttccatacaccaaaagtt 45  Q
    ||||||||||||||||||||||| |||||||||    
T  721074 attgcaaatctgttcttccataccccaaaagtt 721042  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 882181 - 882149
Alignment:
Q  13 attgcaaatctgttcttccatacaccaaaagtt 45  Q
    ||||||||||||||||||||||| |||||||||    
T  882181 attgcaaatctgttcttccataccccaaaagtt 882149  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 30983223 - 30983255
Alignment:
Q  13 attgcaaatctgttcttccatacaccaaaagtt 45  Q
    ||||||||||||||||||||||| |||||||||    
T  30983223 attgcaaatctgttcttccataccccaaaagtt 30983255  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 22810064 - 22810031
Alignment:
Q  12 aattgcaaatctgttcttccatacaccaaaagtt 45  Q
    |||||||||||| |||||||||||||||||||||    
T  22810064 aattgcaaatctattcttccatacaccaaaagtt 22810031  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 27738563 - 27738595
Alignment:
Q  13 attgcaaatctgttcttccatacaccaaaagtt 45  Q
    ||||||||||||||||||||||| |||||||||    
T  27738563 attgcaaatctgttcttccataccccaaaagtt 27738595  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 33232540 - 33232508
Alignment:
Q  13 attgcaaatctgttcttccatacaccaaaagtt 45  Q
    ||||||||||||||||||||||| |||||||||    
T  33232540 attgcaaatctgttcttccataccccaaaagtt 33232508  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 7011733 - 7011700
Alignment:
Q  12 aattgcaaatctgttcttccatacaccaaaagtt 45  Q
    |||||||||||| |||||||||||||||||||||    
T  7011733 aattgcaaatctattcttccatacaccaaaagtt 7011700  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 51125383 - 51125415
Alignment:
Q  13 attgcaaatctgttcttccatacaccaaaagtt 45  Q
    ||||||||||||||||||||||| |||||||||    
T  51125383 attgcaaatctgttcttccataccccaaaagtt 51125415  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 52692625 - 52692593
Alignment:
Q  13 attgcaaatctgttcttccatacaccaaaagtt 45  Q
    ||||||||||||||||||||||| |||||||||    
T  52692625 attgcaaatctgttcttccataccccaaaagtt 52692593  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 4346069 - 4346036
Alignment:
Q  12 aattgcaaatctgttcttccatacaccaaaagtt 45  Q
    |||||||||||| |||||||||||||||||||||    
T  4346069 aattgcaaatctattcttccatacaccaaaagtt 4346036  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 46407571 - 46407539
Alignment:
Q  13 attgcaaatctgttcttccatacaccaaaagtt 45  Q
    ||||||||||||||||||||||| |||||||||    
T  46407571 attgcaaatctgttcttccataccccaaaagtt 46407539  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 50978939 - 50978971
Alignment:
Q  13 attgcaaatctgttcttccatacaccaaaagtt 45  Q
    ||||||||||||||||||||||| |||||||||    
T  50978939 attgcaaatctgttcttccataccccaaaagtt 50978971  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 13896082 - 13896050
Alignment:
Q  13 attgcaaatctgttcttccatacaccaaaagtt 45  Q
    ||||||||||||||||||||||| |||||||||    
T  13896082 attgcaaatctgttcttccataccccaaaagtt 13896050  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 14036699 - 14036667
Alignment:
Q  13 attgcaaatctgttcttccatacaccaaaagtt 45  Q
    ||||||||||||||||||||||| |||||||||    
T  14036699 attgcaaatctgttcttccataccccaaaagtt 14036667  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 14380190 - 14380158
Alignment:
Q  13 attgcaaatctgttcttccatacaccaaaagtt 45  Q
    ||||||||||||||||||||||| |||||||||    
T  14380190 attgcaaatctgttcttccataccccaaaagtt 14380158  T

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