View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17429_low_2 (Length: 310)

Name: NF17429_low_2
Description: NF17429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17429_low_2
NF17429_low_2
[»] chr4 (3 HSPs)
chr4 (174-299)||(39292080-39292209)
chr4 (9-70)||(36203229-36203290)
chr4 (15-72)||(38812862-38812919)
[»] chr7 (7 HSPs)
chr7 (7-70)||(964746-964809)
chr7 (14-65)||(1285081-1285132)
chr7 (7-72)||(3584195-3584260)
chr7 (24-73)||(22267571-22267620)
chr7 (18-66)||(3948051-3948099)
chr7 (19-71)||(35222916-35222968)
chr7 (14-70)||(42829246-42829302)
[»] chr1 (10 HSPs)
chr1 (24-71)||(22388197-22388244)
chr1 (24-71)||(41573291-41573338)
chr1 (12-71)||(43840335-43840394)
chr1 (20-70)||(41998344-41998394)
chr1 (16-69)||(2884462-2884515)
chr1 (20-72)||(18091194-18091247)
chr1 (7-40)||(27687617-27687650)
chr1 (8-69)||(27853349-27853410)
chr1 (19-68)||(44220982-44221031)
chr1 (7-63)||(49868011-49868067)
[»] chr2 (11 HSPs)
chr2 (14-72)||(11931596-11931654)
chr2 (19-70)||(29896311-29896362)
chr2 (16-46)||(1238179-1238209)
chr2 (19-72)||(3197096-3197149)
chr2 (24-61)||(3904204-3904241)
chr2 (7-44)||(30045472-30045509)
chr2 (7-44)||(30050635-30050672)
chr2 (7-44)||(30141679-30141716)
chr2 (7-44)||(37830732-37830769)
chr2 (24-72)||(28277698-28277746)
chr2 (16-72)||(45032684-45032740)
[»] chr8 (4 HSPs)
chr8 (19-72)||(7553670-7553723)
chr8 (7-46)||(24696011-24696050)
chr8 (14-72)||(26886054-26886112)
chr8 (14-70)||(8837913-8837969)
[»] chr6 (3 HSPs)
chr6 (7-46)||(2692232-2692271)
chr6 (25-69)||(7927694-7927738)
chr6 (23-63)||(8330700-8330740)
[»] chr5 (5 HSPs)
chr5 (19-70)||(40445976-40446027)
chr5 (7-44)||(1082224-1082261)
chr5 (14-74)||(8545001-8545061)
chr5 (24-72)||(10531531-10531579)
chr5 (8-40)||(13484542-13484574)
[»] chr3 (7 HSPs)
chr3 (24-71)||(7827500-7827547)
chr3 (24-71)||(7829888-7829935)
chr3 (19-70)||(32753821-32753872)
chr3 (20-75)||(48924337-48924392)
chr3 (19-65)||(48517669-48517715)
chr3 (19-64)||(12976619-12976664)
chr3 (19-71)||(28093346-28093398)


Alignment Details
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 174 - 299
Target Start/End: Complemental strand, 39292209 - 39292080
Alignment:
Q  174 taatgttttaaatgaatctcaattactcaaatcttgaaagtttacacataaagatgtattaattaattaat----gacatacacgattgatgttgtaaaa 269  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||    
T  39292209 taatgttttaaatgaatctcaattactcatatcttcaaagtttacacataaagatgtattaattaattaattaatgacatacacgattgatgttgtaaaa 39292110  T
Q  270 caggtatatgatggctacacccggtgatga 299  Q
    ||||||||||||||||||||||||||||||    
T  39292109 caggtatatgatggctacacccggtgatga 39292080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 36203290 - 36203229
Alignment:
Q  9 aatctcggatcttgtatatattatgcattgtccctatctactaaattaaactcacgaggaca 70  Q
    ||||||||| |||| |||||||||||||||||| |||| ||| |  ||| ||||||||||||    
T  36203290 aatctcggaccttgcatatattatgcattgtccttatcaactgagctaagctcacgaggaca 36203229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 38812862 - 38812919
Alignment:
Q  15 ggatcttgtatatattatgcattgtccctatctactaaattaaactcacgaggacaaa 72  Q
    |||||||| ||||||||||||||||||||| | ||| |  |||||||||||| |||||    
T  38812862 ggatcttgcatatattatgcattgtccctaccgactgagctaaactcacgagaacaaa 38812919  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 964746 - 964809
Alignment:
Q  7 tgaatctcggatcttgtatatattatgcattgtccctatctactaaattaaactcacgaggaca 70  Q
    ||||||||||||||| |||||||||||||||||  ||||| ||| | |||| ||||||||||||    
T  964746 tgaatctcggatcttatatatattatgcattgtttctatcgactgagttaagctcacgaggaca 964809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 1285081 - 1285132
Alignment:
Q  14 cggatcttgtatatattatgcattgtccctatctactaaattaaactcacga 65  Q
    ||||||||| |||||||||||||||| |||||| ||| | ||||||||||||    
T  1285081 cggatcttgcatatattatgcattgttcctatcaactgagttaaactcacga 1285132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 3584260 - 3584195
Alignment:
Q  7 tgaatctcggatcttgtatatattatgcattgtccctatctactaaattaaactcacgaggacaaa 72  Q
    ||||||||| | |||| |||||||||||||||||| || | ||||| |||| ||| ||||||||||    
T  3584260 tgaatctcgtaccttgcatatattatgcattgtccttaccaactaagttaagctcgcgaggacaaa 3584195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 22267620 - 22267571
Alignment:
Q  24 atatattatgcattgtccctatctactaaattaaactcacgaggacaaag 73  Q
    ||||||||||||||||| ||| | ||| | ||||||||||||||||||||    
T  22267620 atatattatgcattgtctctaccaactgagttaaactcacgaggacaaag 22267571  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 3948099 - 3948051
Alignment:
Q  18 tcttgtatatattatgcattgtccctatctactaaattaaactcacgag 66  Q
    ||||| ||||||||||||||||| ||||| ||| | |||||||||||||    
T  3948099 tcttgcatatattatgcattgtctctatcaactgagttaaactcacgag 3948051  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 35222968 - 35222916
Alignment:
Q  19 cttgtatatattatgcattgtccctatctactaaattaaactcacgaggacaa 71  Q
    |||| |||||| |||||||||||||||| ||| |  |||||||||||||||||    
T  35222968 cttgcatatatcatgcattgtccctatcaactgacctaaactcacgaggacaa 35222916  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 42829246 - 42829302
Alignment:
Q  14 cggatcttgtatatattatgcattgtccctatctactaaattaaactcacgaggaca 70  Q
    |||| |||| ||||||||||||||||||||||| ||| | | || ||||||||||||    
T  42829246 cggagcttgcatatattatgcattgtccctatcaactgagtcaagctcacgaggaca 42829302  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 22388197 - 22388244
Alignment:
Q  24 atatattatgcattgtccctatctactaaattaaactcacgaggacaa 71  Q
    ||||||||||||||||||||||| ||||| ||||||| ||||||||||    
T  22388197 atatattatgcattgtccctatcaactaagttaaacttacgaggacaa 22388244  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 41573291 - 41573338
Alignment:
Q  24 atatattatgcattgtccctatctactaaattaaactcacgaggacaa 71  Q
    ||||||||||||||||||||| | ||| | ||||||||||||||||||    
T  41573291 atatattatgcattgtccctaccaactgagttaaactcacgaggacaa 41573338  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 43840335 - 43840394
Alignment:
Q  12 ctcggatcttgtatatattatgcattgtccctatctactaaattaaactcacgaggacaa 71  Q
    ||||||||||  |||| ||||||||||||| |||| ||| | ||||||||||||||||||    
T  43840335 ctcggatcttacatattttatgcattgtccatatcaactgagttaaactcacgaggacaa 43840394  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 41998394 - 41998344
Alignment:
Q  20 ttgtatatattatgcattgtccctatctactaaattaaactcacgaggaca 70  Q
    |||||||||||||| |||||||||||| ||| | |||| ||||||||||||    
T  41998394 ttgtatatattatgaattgtccctatcaactgagttaatctcacgaggaca 41998344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 2884462 - 2884515
Alignment:
Q  16 gatcttgtatatattatgcattgtccctatctactaaattaaactcacgaggac 69  Q
    |||||||||||||||||||||||||| |||| ||| | ||||  ||||||||||    
T  2884462 gatcttgtatatattatgcattgtccatatcaactgagttaaggtcacgaggac 2884515  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 18091247 - 18091194
Alignment:
Q  20 ttgtatatatt-atgcattgtccctatctactaaattaaactcacgaggacaaa 72  Q
    ||||||||||| |||||||||||||||| ||| | |||| ||||||||||||||    
T  18091247 ttgtatatatttatgcattgtccctatcaactgagttaagctcacgaggacaaa 18091194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 27687617 - 27687650
Alignment:
Q  7 tgaatctcggatcttgtatatattatgcattgtc 40  Q
    ||||||||| ||||||||||||||||||||||||    
T  27687617 tgaatctcgtatcttgtatatattatgcattgtc 27687650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 27853410 - 27853349
Alignment:
Q  8 gaatctcggatcttgtatatattatgcattgtccctatctactaaattaaactcacgaggac 69  Q
    ||||| |||||||||||||||||||||||||| | || | ||| | |||| |||||||||||    
T  27853410 gaatcccggatcttgtatatattatgcattgttcataccaactgagttaagctcacgaggac 27853349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 44221031 - 44220982
Alignment:
Q  19 cttgtatatattatgcattgtccctatctactaaattaaactcacgagga 68  Q
    |||||||||||| ||||||||| ||||| ||||| |||| ||||||||||    
T  44221031 cttgtatatattgtgcattgtctctatcaactaagttaagctcacgagga 44220982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 49868067 - 49868011
Alignment:
Q  7 tgaatctcggatcttgtatatattatgcattgtccctatctactaaattaaactcac 63  Q
    ||||||||||| |||| |||||||||||||| ||| |||| ||| | ||||||||||    
T  49868067 tgaatctcggaccttgcatatattatgcattatccatatcaactgagttaaactcac 49868011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 11931654 - 11931596
Alignment:
Q  14 cggatcttgtatatattatgcattgtccctatctactaaattaaactcacgaggacaaa 72  Q
    ||||||||| ||||||||||||||||||||| | | |||| ||| ||||||||||||||    
T  11931654 cggatcttgcatatattatgcattgtccctaccaattaaactaagctcacgaggacaaa 11931596  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 29896311 - 29896362
Alignment:
Q  19 cttgtatatattatgcattgtccctatctactaaattaaactcacgaggaca 70  Q
    |||| ||||||||||||||||  ||||| ||| |||||||||||||||||||    
T  29896311 cttgcatatattatgcattgtttctatcaactgaattaaactcacgaggaca 29896362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 46
Target Start/End: Complemental strand, 1238209 - 1238179
Alignment:
Q  16 gatcttgtatatattatgcattgtccctatc 46  Q
    |||||||||||||||||||||||||||||||    
T  1238209 gatcttgtatatattatgcattgtccctatc 1238179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 3197096 - 3197149
Alignment:
Q  19 cttgtatatattatgcattgtccctatctactaaattaaactcacgaggacaaa 72  Q
    |||| ||||||||||||||||||||| | ||| |  ||||||||||||||||||    
T  3197096 cttgcatatattatgcattgtccctaccaactgagctaaactcacgaggacaaa 3197149  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 3904241 - 3904204
Alignment:
Q  24 atatattatgcattgtccctatctactaaattaaactc 61  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  3904241 atatattatgcattgtccctatcaactaagttaaactc 3904204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 30045509 - 30045472
Alignment:
Q  7 tgaatctcggatcttgtatatattatgcattgtcccta 44  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  30045509 tgaatctcgaaccttgtatatattatgcattgtcccta 30045472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 30050672 - 30050635
Alignment:
Q  7 tgaatctcggatcttgtatatattatgcattgtcccta 44  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  30050672 tgaatctcgaaccttgtatatattatgcattgtcccta 30050635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 30141716 - 30141679
Alignment:
Q  7 tgaatctcggatcttgtatatattatgcattgtcccta 44  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  30141716 tgaatctcgaaccttgtatatattatgcattgtcccta 30141679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 37830769 - 37830732
Alignment:
Q  7 tgaatctcggatcttgtatatattatgcattgtcccta 44  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  37830769 tgaatcttggatcttgtatatattatgtattgtcccta 37830732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 28277698 - 28277746
Alignment:
Q  24 atatattatgcattgtccctatctactaaattaaactcacgaggacaaa 72  Q
    |||||||||||||||||| || | |||||  ||||||||||||||||||    
T  28277698 atatattatgcattgtccttaccaactaagctaaactcacgaggacaaa 28277746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 45032740 - 45032684
Alignment:
Q  16 gatcttgtatatattatgcattgtccctatctactaaattaaactcacgaggacaaa 72  Q
    ||||||| ||||||||||||||||||||| | ||| |  ||| ||||||||||||||    
T  45032740 gatcttgcatatattatgcattgtccctaccaactgaggtaagctcacgaggacaaa 45032684  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 7553723 - 7553670
Alignment:
Q  19 cttgtatatattatgcattgtccctatctactaaattaaactcacgaggacaaa 72  Q
    |||| ||||||||||||||||||||| | ||| | |||||||||||||||||||    
T  7553723 cttgcatatattatgcattgtccctaccaactgagttaaactcacgaggacaaa 7553670  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 24696011 - 24696050
Alignment:
Q  7 tgaatctcggatcttgtatatattatgcattgtccctatc 46  Q
    |||||||||||||||| |||||||||||||||||| ||||    
T  24696011 tgaatctcggatcttgcatatattatgcattgtccatatc 24696050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 26886054 - 26886112
Alignment:
Q  14 cggatcttgtatatattatgcattgtccctatctactaaattaaactcacgaggacaaa 72  Q
    ||||||||  |||| ||||||||||||| || | ||||| |||||||||||||||||||    
T  26886054 cggatcttacatattttatgcattgtccataccaactaagttaaactcacgaggacaaa 26886112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 8837969 - 8837913
Alignment:
Q  14 cggatcttgtatatattatgcattgtccctatctactaaattaaactcacgaggaca 70  Q
    |||| |||||||||||||||||||||||||||| ||  | ||||  |||||||||||    
T  8837969 cggaccttgtatatattatgcattgtccctatcaaccgagttaagttcacgaggaca 8837913  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 2692271 - 2692232
Alignment:
Q  7 tgaatctcggatcttgtatatattatgcattgtccctatc 46  Q
    |||||||||||||||| |||||||||||||||||| ||||    
T  2692271 tgaatctcggatcttgcatatattatgcattgtccatatc 2692232  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 7927738 - 7927694
Alignment:
Q  25 tatattatgcattgtccctatctactaaattaaactcacgaggac 69  Q
    |||||||||||||||||||||| ||| || ||| |||||||||||    
T  7927738 tatattatgcattgtccctatcaactgaactaagctcacgaggac 7927694  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 8330740 - 8330700
Alignment:
Q  23 tatatattatgcattgtccctatctactaaattaaactcac 63  Q
    ||||||||||||| |||||||||||||| || |||||||||    
T  8330740 tatatattatgcaatgtccctatctactgaactaaactcac 8330700  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 40446027 - 40445976
Alignment:
Q  19 cttgtatatattatgcattgtccctatctactaaattaaactcacgaggaca 70  Q
    |||| |||||||||||||||||| |||| ||| | |||||||||||||||||    
T  40446027 cttgcatatattatgcattgtccttatcaactgagttaaactcacgaggaca 40445976  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 1082224 - 1082261
Alignment:
Q  7 tgaatctcggatcttgtatatattatgcattgtcccta 44  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  1082224 tgaatctcggaccttgtatatattatacattgtcccta 1082261  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 8545001 - 8545061
Alignment:
Q  14 cggatcttgtatatattatgcattgtccctatctactaaattaaactcacgaggacaaaga 74  Q
    |||| |||| |||||||||||||||||| |||| ||| | |||| |||||||| |||||||    
T  8545001 cggaccttgcatatattatgcattgtccttatcaactgagttaagctcacgagaacaaaga 8545061  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 10531579 - 10531531
Alignment:
Q  24 atatattatgcattgtccctatctactaaattaaactcacgaggacaaa 72  Q
    |||||||||||||||||| || | |||||| ||| ||||||||||||||    
T  10531579 atatattatgcattgtccatagcaactaaactaagctcacgaggacaaa 10531531  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 13484542 - 13484574
Alignment:
Q  8 gaatctcggatcttgtatatattatgcattgtc 40  Q
    ||||||| |||||||||||||||||||||||||    
T  13484542 gaatctcagatcttgtatatattatgcattgtc 13484574  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 7827547 - 7827500
Alignment:
Q  24 atatattatgcattgtccctatctactaaattaaactcacgaggacaa 71  Q
    |||||||||||||||||| |||| ||| | ||||||||||||||||||    
T  7827547 atatattatgcattgtccatatcaactgagttaaactcacgaggacaa 7827500  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 7829935 - 7829888
Alignment:
Q  24 atatattatgcattgtccctatctactaaattaaactcacgaggacaa 71  Q
    |||||||||||||||||| |||| ||| | ||||||||||||||||||    
T  7829935 atatattatgcattgtccatatcaactgagttaaactcacgaggacaa 7829888  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 32753872 - 32753821
Alignment:
Q  19 cttgtatatattatgcattgtccctatctactaaattaaactcacgaggaca 70  Q
    |||||||||||||||||||||||||||| ||| | | || ||||||||||||    
T  32753872 cttgtatatattatgcattgtccctatcaactgagtcaagctcacgaggaca 32753821  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 48924337 - 48924392
Alignment:
Q  20 ttgtatatattatgcattgtccctatctactaaattaaactcacgaggacaaagac 75  Q
    ||||||||||||| ||||||||||| | |||||  |||||||||||||||| ||||    
T  48924337 ttgtatatattatacattgtccctaccaactaagctaaactcacgaggacagagac 48924392  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 48517715 - 48517669
Alignment:
Q  19 cttgtatatattatgcattgtccctatctactaaattaaactcacga 65  Q
    ||||||||||||||||||||| |||||| ||| | ||||||||||||    
T  48517715 cttgtatatattatgcattgttcctatcaactgagttaaactcacga 48517669  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 12976619 - 12976664
Alignment:
Q  19 cttgtatatattatgcattgtccctatctactaaattaaactcacg 64  Q
    |||| ||||||||||||||||||||||| ||| | |||||||||||    
T  12976619 cttgcatatattatgcattgtccctatcaactgagttaaactcacg 12976664  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 28093398 - 28093346
Alignment:
Q  19 cttgtatatattatgcattgtccctatctactaaattaaactcacgaggacaa 71  Q
    |||| |||||||||||||||||| || | ||| ||||||||||||| ||||||    
T  28093398 cttgcatatattatgcattgtccataccaactgaattaaactcacggggacaa 28093346  T

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