View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1742_high_4 (Length: 335)
Name: NF1742_high_4
Description: NF1742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1742_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 9 - 320
Target Start/End: Original strand, 48091038 - 48091360
Alignment:
| Q |
9 |
taatactacagagtgcaaaagagggtactttaacatgcatcttactatatatgcaatgtatatatgcatgacagtccacaccttaaattttattttccaa |
108 |
Q |
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| T |
48091038 |
taatactacagagtgcaaaagagggtactttaacatgcatcttactatatatgcaatgtat----gcatgacagtccacaccttaaattttattttccaa |
48091133 |
T |
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| Q |
109 |
tgtatg----aataaaatgcaactactacct-----------tttgttgtgtgggccattcttccatcaatattattttccaaaatcatcatatacatat |
193 |
Q |
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|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48091134 |
tgtatgtatgaataaaatgcaactactacctgtgtactaccttttgttgtgtgggccattcttccatcaatattattttccaaaatcatcatatacatat |
48091233 |
T |
|
| Q |
194 |
taatatctctgacacacnnnnnnnnnnnngcacctttcctcattcctctacttacagtcttcatatacattgctaattttaagttgaattaaatccatgg |
293 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48091234 |
taatatctctgacacactatatatatatagcacctttcctcattcctctacttacagtcttcatatacattgctaattttaagttgaattaaatccatgg |
48091333 |
T |
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| Q |
294 |
ctgccactatggttttgcagtcttatt |
320 |
Q |
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||||||||||||||||||||||||||| |
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| T |
48091334 |
ctgccactatggttttgcagtcttatt |
48091360 |
T |
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