View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1742_high_8 (Length: 236)
Name: NF1742_high_8
Description: NF1742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1742_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 32269076 - 32268858
Alignment:
| Q |
1 |
tcaatcccaaaccaccaccataatttcctttacaatttcatcaatctccttaataattatattgacaattatgtcattgctacattttttaaatcatcca |
100 |
Q |
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| T |
32269076 |
tcaatcccaaaacaccaccataatttcctctacaatttcatcaatctccttaatacaaatattgaaaattatgtcatttctacattttttaaatcatcca |
32268977 |
T |
|
| Q |
101 |
aagagtagcatgccaaattatcaaccatccctttccgagcttcttatccctcacctccctcctcaaaaattcaaaatggacaaacaaattttgccgagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32268976 |
aagagtagcatgccaaattatcaaccatcccttttagagcttcttatccctcacctccctcctcaaaaattcaaaatggacaaacaaattttgccgagtt |
32268877 |
T |
|
| Q |
201 |
atgatattgatttcaagcc |
219 |
Q |
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||||||||||||||||||| |
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| T |
32268876 |
atgatattgatttcaagcc |
32268858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 193
Target Start/End: Original strand, 7701685 - 7701780
Alignment:
| Q |
98 |
ccaaagagtagcatgccaaattatcaaccatccctttccgagcttcttatccctcacctccctcctcaaaaattcaaaatggacaaacaaattttg |
193 |
Q |
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|||||| |||||||||||||| ||| |||| ||||||| |||||||||| |||||||| || ||| || ||||||||| ||||||| ||||| |
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| T |
7701685 |
ccaaagtgtagcatgccaaatcatccaccacccctttcttagcttcttattcctcaccttcccactccaactttcaaaatgagcaaacaagttttg |
7701780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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