View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1742_low_1 (Length: 414)
Name: NF1742_low_1
Description: NF1742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1742_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 23145190 - 23145474
Alignment:
| Q |
1 |
taaacagttgaaagggctggtgataagtactaagaaggtgaaggatatattaggcttaatttgttgagcaaatatatctacaatttggaatgccaggaat |
100 |
Q |
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| T |
23145190 |
taaacagttgaaagggctggtgttaagtactaagaaggtgaaggatatattaggcttaatttgttgcgcaaatatatctataatctggaaagccaataat |
23145289 |
T |
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| Q |
101 |
gccaggattttcgatcaagatgggtttaattgggaaaaaatggtgaaggaagcaaaaatcttttcatcgagttattcaatcaaggtgtaaaagttttatt |
200 |
Q |
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| T |
23145290 |
gccatgattttcgatcaagatgggtttaattgggaaaaagtagtgaaggaagcaaaaatcttttcatcgagttattcaatcaaggtgtaaaagttttatt |
23145389 |
T |
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| Q |
201 |
ttctctttaaatccgtggctgttgcatccggtggagtgtatgggagtggaggcggaactgagtggcgatttgggatcatcgtctc |
285 |
Q |
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| T |
23145390 |
ttctctttaaatccgtggctgtttcatccggtggagtgtatgggagtggaggtggaactgagtggcgatttgggatcatcgtctc |
23145474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 302 - 404
Target Start/End: Original strand, 23145461 - 23145563
Alignment:
| Q |
302 |
gggatcatcgtctcttgtttcttgcttcttttgtattatgctttctgcacaggctttaggagtttttctgtatctgttttgtctctactgctatacctct |
401 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
23145461 |
gggatcatcgtctcttgtttcctgcttcttttgtattatgctttctgcacaggctttaggagtttttctgtatctgttttctctctactgctatacctct |
23145560 |
T |
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| Q |
402 |
gtg |
404 |
Q |
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||| |
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| T |
23145561 |
gtg |
23145563 |
T |
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