View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1742_low_4 (Length: 373)
Name: NF1742_low_4
Description: NF1742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1742_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 140 - 357
Target Start/End: Complemental strand, 40314957 - 40314740
Alignment:
| Q |
140 |
caatacatgggtaaaatagattcttgaatgagatacttattaggaacaatgtgactgtatagttgatatttgattgtacctttagatgcattacttattg |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40314957 |
caatacatgggtaaaatagattcttgaatgagatacttattaggaacaatgtgactgtatagttgatatttgattgtacctttagatgcattacttattg |
40314858 |
T |
|
| Q |
240 |
atagcacatgattgtactttatgcctcatggtctagaaattgaaagaactcattttaatatcgaaatgaaaataccaaggagaaaggacttccataaagc |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40314857 |
atagcacatgattgtactttatgcctcatgctctagaaattgaaagaactcattttaatatcgaaatgaaaataccaaggagaaaggacttccataaagc |
40314758 |
T |
|
| Q |
340 |
ggccaaatagcagcaagt |
357 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
40314757 |
ggccaaatagcagcaagt |
40314740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 40315131 - 40315018
Alignment:
| Q |
13 |
tgaagggaatatgaatcttgaaaatagatgcaatggaacaaagggaaagttcataaaacaaacttaaggagcacgtcggcattcttctgttgttagagaa |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40315131 |
tgaagggaatatgaatcttgaaaatagatgcaatggaacaa-gggaaagttcataaaacaaacttaaggagcacgtcggcattcttctgttgttagagaa |
40315033 |
T |
|
| Q |
113 |
agtatcaaatgttgt |
127 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
40315032 |
agtatcaaatgttgt |
40315018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University