View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1742_low_6 (Length: 329)
Name: NF1742_low_6
Description: NF1742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1742_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 11 - 313
Target Start/End: Complemental strand, 46463227 - 46462925
Alignment:
| Q |
11 |
cataggcaaaagtagaaatttcaagtggaagatattagaagatttcttttcaagtataagggaactattacattcacttgaaaaaaggataattnnnnnn |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
46463227 |
cataggcaaaagtagaaatttcaagtggaagatattagaagatttcttttcaagtataagagaactattacattcacttgaaaaaaggataattaaaaaa |
46463128 |
T |
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| Q |
111 |
ntctcaaagaagaaactatatgacaatatacacagttccatatattggtttctaacaaaaatctacagattttaattcattccctatagaacagaaatct |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46463127 |
atctcaaagaagaaactatatgacaatatacacagttccatatattggtttctaacaaaaatctacagattttaattcattccctatagaacagaaatct |
46463028 |
T |
|
| Q |
211 |
aatacacaagggaggtacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatctgaagacat |
310 |
Q |
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| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46463027 |
attacacaagggaggtacccttaacatactctgtaaaggccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatctgaagacat |
46462928 |
T |
|
| Q |
311 |
aac |
313 |
Q |
| |
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||| |
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| T |
46462927 |
aac |
46462925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 203 - 313
Target Start/End: Complemental strand, 46452067 - 46451957
Alignment:
| Q |
203 |
agaaatctaatacacaagggaggtacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatct |
302 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46452067 |
agaaatctattacacaagggaggtacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatct |
46451968 |
T |
|
| Q |
303 |
gaagacataac |
313 |
Q |
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||||||||||| |
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| T |
46451967 |
gaagacataac |
46451957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 203 - 313
Target Start/End: Original strand, 46344489 - 46344599
Alignment:
| Q |
203 |
agaaatctaatacacaagggaggtacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatct |
302 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46344489 |
agaaatctattacacaagggaggtacccttaacatactctgtaaaggccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatct |
46344588 |
T |
|
| Q |
303 |
gaagacataac |
313 |
Q |
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||||||||||| |
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| T |
46344589 |
gaagacataac |
46344599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 213 - 310
Target Start/End: Complemental strand, 46466447 - 46466350
Alignment:
| Q |
213 |
tacacaagggaggtacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatctgaagacat |
310 |
Q |
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|||||||||| |||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||| || ||||||| ||| ||||| |
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| T |
46466447 |
tacacaagggcagtacccttaacatattctgtaacagccagagcaatcaaacccaacatagcaattcttccattccaaagctctgcatttgaggacat |
46466350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 213 - 310
Target Start/End: Complemental strand, 46471652 - 46471555
Alignment:
| Q |
213 |
tacacaagggaggtacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatctgaagacat |
310 |
Q |
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|||||||||| |||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||| || ||||||| ||| ||||| |
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| T |
46471652 |
tacacaagggcagtacccttaacatattctgtaacagccagagcaatcaaacccaacatagcaattcttccattccaaagctctgcatttgaggacat |
46471555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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