View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1743-Insertion-1 (Length: 344)
Name: NF1743-Insertion-1
Description: NF1743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1743-Insertion-1 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 8 - 344
Target Start/End: Original strand, 43618222 - 43618558
Alignment:
| Q |
8 |
atattcatatgtgaatgattgtcaatctcacatcaatgatgaatgagtttaatttgaacaaataaaagaagttatatcatatacataatttcttaaattt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43618222 |
atattcatatgtgaatgattgtcaatctcacatcaatggtgaatgagtttaatttgaacaaataaaagaagttatatcatatacataatttcttaaattt |
43618321 |
T |
|
| Q |
108 |
ctagatttctttgtggtcctgaattttgttttttgctcctatgctcctcaacacttattacaatttctagatgagtgtcatgaataggagaaaaacgagt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
43618322 |
ctagatttctttgtggtcctgaattttgttttttgctcctatgctcctcaacacttattacaatttctagatgagtatcatgaataggagaaaaacgagt |
43618421 |
T |
|
| Q |
208 |
caaagtaaaataatacttcaattgataataagagtgttttttctttgacgtttataataagagtgttaattatatatatgggatccaattaaacttataa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43618422 |
caaagtaaaataatacttcaattgataataagagtgttttttctttgaggtttataataagagtgttaattatatatatgggatccaattaaacttataa |
43618521 |
T |
|
| Q |
308 |
gggcaatgtaaataataacctctaactactgtaacta |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43618522 |
gggcaatgtaaataataacctctaactactgtaacta |
43618558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University