View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1743-Insertion-2 (Length: 497)

Name: NF1743-Insertion-2
Description: NF1743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1743-Insertion-2
NF1743-Insertion-2
[»] chr2 (10 HSPs)
chr2 (8-224)||(11613843-11614057)
chr2 (397-495)||(11613569-11613667)
chr2 (289-368)||(11613699-11613778)
chr2 (13-179)||(11594553-11594733)
chr2 (114-206)||(11722717-11722809)
chr2 (305-370)||(11722912-11722979)
chr2 (13-108)||(11606527-11606622)
chr2 (305-370)||(11594351-11594418)
chr2 (444-495)||(11723110-11723162)
chr2 (399-445)||(11594274-11594321)


Alignment Details
Target: chr2 (Bit Score: 153; Significance: 7e-81; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 8 - 224
Target Start/End: Complemental strand, 11614057 - 11613843
Alignment:
Q  8 ataacccctaaacctctaatattccaagatcccgctacaatctccaaccgcctcttctcggctgaagc----taacacctccatatcctcaaacctagta 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||| ||| ||||||||||||||    
T  11614057 ataacccctaaacctctaatattccaagatcccgctacaatctccaaccgcctcttctcggctgaagctaattaacacctctataccctcaaacctagta 11613958  T
Q  104 acctccaactcatcatctcttccaaaacaaaatcctagaccctttcccttacccaaaatagttgtggaaacaaaacgtttgtgtgacccactcggatctc 203  Q
    ||||||||||| || |||| ||||||||||||||||||      |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11613957 acctccaactcgtcgtctcgtccaaaacaaaatcctag------tcccttacccaaaatagttgtggaaaaaaaacgtttgtgtgacccactcggatctc 11613864  T
Q  204 tctcttggaacaacataatca 224  Q
    ||||| |||||||||||||||    
T  11613863 tctctcggaacaacataatca 11613843  T

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Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 397 - 495
Target Start/End: Complemental strand, 11613667 - 11613569
Alignment:
Q  397 gcctccaacatagtagaacaaaaggaaggcacacttagtccaccccacataaaacacttcagtactacagtttaagaaaaatcaaaaactaccacatag 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11613667 gcctccaacatagtagaacaaaaggaaggcacacttagtccaccccacataaaacacttcagtactacagtttaagaaaaaccaaaaactaccacatag 11613569  T

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Target: chr2; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 289 - 368
Target Start/End: Complemental strand, 11613778 - 11613699
Alignment:
Q  289 ccaaagtttaagacactttaagtaaaatataaaaacaacaaccttccttggcagattaactagaatatagttcataacaa 368  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11613778 ccaaagtttaagacactttaagcaaaatataaaaacaacaaccttccttggcagattaactagaatatagttcataacaa 11613699  T

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Target: chr2; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 11594733 - 11594553
Alignment:
Q  13 ccctaaacctctaatattccaagatcccgctacaatctccaaccgcctcttctcggctgaagctaacacctccatatcctcaaacctagtaacc------ 106  Q
    |||||| |||||||||||  |||||| | ||| | ||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||          
T  11594733 ccctaatcctctaatattataagatctcactagagtctccaaccgcctcttctcggctgaagctaacacctctaaaccctcaaacctagtaacctcgaac 11594634  T
Q  107 --------tccaactcatcatctcttccaaaacaaaatcctagaccctttcccttacccaaaatagttgtggaaacaaaac 179  Q
            ||||||||||| ||||| ||||||||||||| ||| ||| ||||||||||||||| ||||| |||||||||||    
T  11594633 cgttcaagtccaactcatcgtctctaccaaaacaaaatcatagtccccttcccttacccaaaacagttgaggaaacaaaac 11594553  T

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Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 11722717 - 11722809
Alignment:
Q  114 catcatctcttccaaaacaaaatcctagaccctttcccttacccaaaatagttgtggaaacaaaacgtttgtgtgacccactcggatctctct 206  Q
    |||| ||||| ||||||||||| ||||| ||||||||||| |||||||||||||||| |||||||||  ||||||||||||||  ||||||||    
T  11722717 catcttctctaccaaaacaaaaccctagtccctttcccttgcccaaaatagttgtggcaacaaaacgactgtgtgacccactcaaatctctct 11722809  T

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Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 305 - 370
Target Start/End: Original strand, 11722912 - 11722979
Alignment:
Q  305 tttaagtaaaatataaaaacaacaaccttccttggcag--attaactagaatatagttcataacaagg 370  Q
    |||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  11722912 tttaagcaaaatataaaaacaacaaccttccttggcagtaattaactagaatatagttcataacaagg 11722979  T

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Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 11606622 - 11606527
Alignment:
Q  13 ccctaaacctctaatattccaagatcccgctacaatctccaaccgcctcttctcggctgaagctaacacctccatatcctcaaacctagtaacctc 108  Q
    |||||| ||||||||| |  |||||| | ||| | ||||||||||||||||||||||| ||||||||||||| | | |||||||||||||||||||    
T  11606622 ccctaatcctctaataataaaagatctcactagagtctccaaccgcctcttctcggctaaagctaacacctctaaaccctcaaacctagtaacctc 11606527  T

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Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 305 - 370
Target Start/End: Complemental strand, 11594418 - 11594351
Alignment:
Q  305 tttaagtaaaatataaaaacaacaaccttccttggcag--attaactagaatatagttcataacaagg 370  Q
    |||||| ||| |||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||    
T  11594418 tttaagcaaagtataaaaacaacaaccttccttagcagtaattaactagaatatagttcataacaagg 11594351  T

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Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 444 - 495
Target Start/End: Original strand, 11723110 - 11723162
Alignment:
Q  444 cataaaacacttcagtactacagtttaagaaaaa-tcaaaaactaccacatag 495  Q
    ||||||||||||||||||||||| ||||||||||  |||||||||||||||||    
T  11723110 cataaaacacttcagtactacagattaagaaaaacccaaaaactaccacatag 11723162  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 445
Target Start/End: Complemental strand, 11594321 - 11594274
Alignment:
Q  399 ctccaacatagtagaacaaaaggaaggcaca-cttagtccaccccaca 445  Q
    ||||||||||||| |||||||| |||||||| ||||||||||||||||    
T  11594321 ctccaacatagtaaaacaaaagaaaggcacatcttagtccaccccaca 11594274  T

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