View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1743-Insertion-3 (Length: 859)
Name: NF1743-Insertion-3
Description: NF1743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1743-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 583; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 6 - 633
Target Start/End: Complemental strand, 37561334 - 37560707
Alignment:
| Q |
6 |
caatatgcttgctgcgaccatgcataaccggatttttagacagcttgattgttgagctattatcacacatcacatttattccatttccacaagtatgtcc |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37561334 |
caatatgcttgctgcgaccatgcataaccggatttttagacagcttgattgttgagctattatcacacatcacatttattccatttccacaagtatgtcc |
37561235 |
T |
|
| Q |
106 |
aagctcctctaaaattctcttcatccatattccttgacaaacgcatactgcagcagccacaaactcagcttccgtagtcgacaaagtcacaataggctgn |
205 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
37561234 |
aagctcctctaaaattctcttcatccatattccttgacaaacgcatactgcagcagccacaaactcagctttcgtagtcgacaaagtcaaaataggctgt |
37561135 |
T |
|
| Q |
206 |
nnnnnngagcaccatgaaacggcccctgaactcattaagaatacataaccagatgtactcttcctatcatccacgtctccggcatagtcgctatctgtga |
305 |
Q |
| |
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| T |
37561134 |
ttttttgagcaccatgaaacagcccctgaactcattaagaatacataaccagatgtactcttcctatcatccacgtctccggcatagtcgctatctgtga |
37561035 |
T |
|
| Q |
306 |
acgctaacagcttgccttctcctcctttcctataatgaagtccatagttcacagtcccttttaaatatcgaagtgctctctttgctacttgcagatgaat |
405 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37561034 |
acgctaacagcttgccttctcctcctttcttataatgaagtccatagttcacagtcccttttaaatatcgaagtgctctctttgctacttgcagatgaat |
37560935 |
T |
|
| Q |
406 |
atccattggtttggtcatatatctacttatgagacaagtaacaaacatcatgtcaggtcttgtagcagtaagatacattaagcttcccaccaactgcttg |
505 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37560934 |
atgcattggtttggtcatatatctacttatgagacaagtaacaaacatcatgtcaggtcttgtagcagtaagatacattaagcttcccaccaactgcttg |
37560835 |
T |
|
| Q |
506 |
tagtatgtttcatcaacctcttttccatctccatctttgcttactttaaatccgggaactattggactgctcactgaattactttccatcataccaaacc |
605 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37560834 |
tagtatgtttcatcaacctcctttccatctccatctttgcttactttaaatccgggaactattggactgctcactgaattactttccatcataccaaacc |
37560735 |
T |
|
| Q |
606 |
ttttcaaaacctctgatgcatatttcct |
633 |
Q |
| |
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| T |
37560734 |
ttttcaaaacctctgatgcatatttcct |
37560707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 634 - 859
Target Start/End: Complemental strand, 37560538 - 37560313
Alignment:
| Q |
634 |
aatgataatttttccttctttgcttctctttgtgaataaagtctgctcactatcacacctctgaaatccttcatcaataaagtgtgcttcgattcgacta |
733 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37560538 |
aatgataatttttccttctttgcttctctttgtgaataaagtctgctcactatcacacctctgaaatccttcatcaataaagtgtgcttcgattcgacta |
37560439 |
T |
|
| Q |
734 |
aaccaagctcgtggggcttgttttaatccatacaaagctttgtgtaacttgtaaacaagatgctcactgcccnnnnnnncataccctcttggctgttcca |
833 |
Q |
| |
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| T |
37560438 |
aaccaagctcgtggggcttgttttaatccatacaaagctttgtgtaacttgtaaacaagatgctcactgccctttttttcataccctcttggctgttcca |
37560339 |
T |
|
| Q |
834 |
catagacatcttcatttaattcacca |
859 |
Q |
| |
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|||||||||||||||||||||||||| |
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|
| T |
37560338 |
catagacatcttcatttaattcacca |
37560313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 734 - 789
Target Start/End: Complemental strand, 34599360 - 34599305
Alignment:
| Q |
734 |
aaccaagctcgtggggcttgttttaatccatacaaagctttgtgtaacttgtaaac |
789 |
Q |
| |
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|||||||||| |||||||| ||||| |||||||| ||||| |||||||||||||| |
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|
| T |
34599360 |
aaccaagctctaggggcttgctttaagccatacaaggctttatgtaacttgtaaac |
34599305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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