View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1743-Insertion-4 (Length: 290)
Name: NF1743-Insertion-4
Description: NF1743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1743-Insertion-4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 7 - 290
Target Start/End: Original strand, 53838817 - 53839100
Alignment:
| Q |
7 |
accaaacacatgaataacatttttaaaataaaatacaaaaactaattcaatatcaacattatctcacgtcctcttatgccatgcctacttgtatatcaaa |
106 |
Q |
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| T |
53838817 |
accaaacgcatgaataacatcgttaaaataaaataaaaaaacaaattcaatatcaacattatctcacgtcctcttataccatgcctacttgtatatcaaa |
53838916 |
T |
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| Q |
107 |
atcacaaaataataataatccaaataacnnnnnnnctgtgtctttcctctatgttcaccaattttgtgtagcgtactaaatttgtatgtggcgctacctg |
206 |
Q |
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| T |
53838917 |
atcacaaaataataataatccaaataacaagaaaactgtgtctttcctctatgttcaccaattttgtgtagtgtactaaatttgtatgtggcgctacctg |
53839016 |
T |
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| Q |
207 |
tgnnnnnnnnntttgaaaatcaattttgttcaagaagaggtttacaaatttcttgaatgggaggggcattccactgagcagtaa |
290 |
Q |
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| T |
53839017 |
tgaaataaaaatttgaaaatcaattttgttcaagaagaggtttacaaatttcttgaatgggaggggcattccactgagcagtaa |
53839100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 279
Target Start/End: Original strand, 53831123 - 53831180
Alignment:
| Q |
223 |
aaatcaattttgttcaagaa-gaggtttacaaatttcttgaatgggaggggcattcca |
279 |
Q |
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| T |
53831123 |
aaatcaattttgttgaagaatggggtttacaaatttcttcaatgggaggggcattcca |
53831180 |
T |
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