View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1743-Insertion-5 (Length: 923)
Name: NF1743-Insertion-5
Description: NF1743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1743-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 539; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 13 - 666
Target Start/End: Complemental strand, 49495228 - 49494598
Alignment:
| Q |
13 |
catctgtcatcaagacatatttgcaaaatataaactttgtagcaccttcatgtctcttataaccatctcaaccctaccccagatgagattatttcttcgg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
49495228 |
catctgtcatcaagacatatttgcaaaatataaactttgtagcaccttcatgtctcttataaccatctcaactctaccccagatgagattatttcttcgg |
49495129 |
T |
|
| Q |
113 |
catatgtatataaataaagggcaacgtttgtagctttggagttctgttgtttgaattgttatcagggaaatcccagaaatccctcagatgattctgattg |
212 |
Q |
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| T |
49495128 |
catatgtatataaataaagggcaacgtttgtagctttggagttctgttgtttgaattgttatcagggaaatccc---------tcagatgattctgattg |
49495038 |
T |
|
| Q |
213 |
tgatgtttaggaataaagaaatttgtggcctataagaatcacaagtcactaaatcaattcatgattgtgaaactgttctttgttggattcgtaacaaatg |
312 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
49495037 |
tgatgtttaggaataaagaaatttgtggcctataagactcacaagtcactaaatcaattcctgattgtgaaactgttctttgttggattcgtaacaaatg |
49494938 |
T |
|
| Q |
313 |
cgtgtaatggattgtatcagtgagtcccaagctgctgcgtagaagccccacatcaacaagtcaagactcaagaaaggaactgagtaggtgttaaatggaa |
412 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49494937 |
cgtgtaatggattgtatcagtgattcccaagctgctgcgtagaagccccacatcaacaagtcaagactcaagaaaggaactgagtaggtgttaaatggag |
49494838 |
T |
|
| Q |
413 |
ctgcaaggccatatttcaactcatctctcttgacctttcggctaagatcgcgtgtagtatttgttcttatcggtataaatgtgtgcaaaatgattttaag |
512 |
Q |
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| T |
49494837 |
ctgcaaggccatatttcaactcatctctcttgaccttttggctaagatcgcgtttagtatttgttcttatcggtatagatgtgtgcaaaatgattttaag |
49494738 |
T |
|
| Q |
513 |
cagtttaattatccaaacttaattaataagctagtttgaacttatttcaactctttaaccaaaatcattacgcgaacttcagcaaacatataaataatta |
612 |
Q |
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| T |
49494737 |
cagtttaattatccaaacttaattaataagctagtttgaacttatttcaaccctttaaccaaaa--------------tcagcaaacatataaataatta |
49494652 |
T |
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| Q |
613 |
caccagaaaaacgaaattcatagtagtcgtggaacatttcatcactgaacatgc |
666 |
Q |
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| T |
49494651 |
caccagaaaaacgaaattcatagtagtcgtggaacatttcatcactgaacatgc |
49494598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 704 - 923
Target Start/End: Complemental strand, 49494560 - 49494339
Alignment:
| Q |
704 |
gttgagtggcttatataataagctctaacggaacaacaacctccatttggaatcccattcacaacgagtggcttgaaatccattacccaaagaagaagtt |
803 |
Q |
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| T |
49494560 |
gttgagtggcttatataataagctctaacggaacaacaaccaccatttggaatcccattcacaacgagtggcttgaaatccattacccaaagaagaagtt |
49494461 |
T |
|
| Q |
804 |
ccattgtgtgacttgaaaggaaccttcaaatcacaatgatggttttgtttcagattccctgtcttgatcaaacccaaggcaaacctaacattaagc-aaa |
902 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
49494460 |
ccattgtgtgacttgaaaggaaccttcaaatcacaatgatggttttgtttcagattccctgtcttgatcaaacccaaggcaaacctaacattaagcaaaa |
49494361 |
T |
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| Q |
903 |
ccttc-aattaattccataaac |
923 |
Q |
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||||| |||||||||||||||| |
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| T |
49494360 |
ccttcaaattaattccataaac |
49494339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 763 - 839
Target Start/End: Original strand, 22601971 - 22602047
Alignment:
| Q |
763 |
cacaacgagtggcttgaaatccattacccaaagaagaagttccattgtgtgacttgaaaggaaccttcaaatcacaa |
839 |
Q |
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||||| |||| |||||||| ||||| ||||||||||||| ||||| ||||| || ||||| ||||||||||||||| |
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| T |
22601971 |
cacaatgagtagcttgaaaaccattccccaaagaagaagaaccattatgtgatttcaaaggcaccttcaaatcacaa |
22602047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 739 - 839
Target Start/End: Original strand, 25169756 - 25169856
Alignment:
| Q |
739 |
acaacctccatttggaatcccattcacaacgagtggcttgaaatccattacccaaagaagaagttccattgtgtgacttgaaaggaaccttcaaatcaca |
838 |
Q |
| |
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|||| ||||||||| ||||||| ||||| ||| |||||||| |||| ||||||||||||| ||||| ||||| || ||||| |||||||||||||| |
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| T |
25169756 |
acaatctccatttgtaatcccaatcacattcagtagcttgaaacacattccccaaagaagaagaaccattatgtgatttcaaaggtaccttcaaatcaca |
25169855 |
T |
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| Q |
839 |
a |
839 |
Q |
| |
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| |
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|
| T |
25169856 |
a |
25169856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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