View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1743-Insertion-6 (Length: 944)
Name: NF1743-Insertion-6
Description: NF1743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1743-Insertion-6 |
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Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 483 - 938
Target Start/End: Original strand, 24499611 - 24500065
Alignment:
| Q |
483 |
agtgcatgtaattaagtgaagataacaagagtagtgtgacaaaaatcatgaaattgattattttgggcacatagaataagagaattttggcaccttatcg |
582 |
Q |
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||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24499611 |
agtgcatgtaattaagtgatgataacaagagt---gtgacaaaaatcatgaaattgattattttgggcacatagaataagagaattttggcaccttatcg |
24499707 |
T |
|
| Q |
583 |
tacgagtaacagcaaatatgagcaaaactagaaagaacagttgtgctatcacatcaaatcatgtcacgatttcatcagttatgaaatatgatatcatatg |
682 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
24499708 |
tacgagtaacagcaaatatgagcaaaactagaaagaacagttgtgctatcacatcaaatcatatcacgatttcatcagttatgaaatatg-----atatg |
24499802 |
T |
|
| Q |
683 |
gttct-----atgtatgcaaacttttctatcgtcaattaattggtaaaatacagctgcaaagcacatcactctctttaaagttttaaataaggctttcct |
777 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24499803 |
gttctatgtaatgtatgcaaacttttctatcgtcaattaattggtcaaatacagctgcaaagcacatcactctctttaaagttttaaataaggctttcct |
24499902 |
T |
|
| Q |
778 |
atatttgaaaataattacgattaaggcttaccnnnnnnnnggcgttgaagaaaatcggtttaccttcttctcgaccaattttttataatctattctaaat |
877 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24499903 |
atatttgaaaataattacgattaaggcttaccttttttttggcgttgaagaaaatcggtttaccttcttctcgaccaattttttataatctattctaaat |
24500002 |
T |
|
| Q |
878 |
ggttctaaactatatat-aaagcaatattagggttactttttcccttc-aattatatctttaa |
938 |
Q |
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| T |
24500003 |
ggttctaaactatatataaaagcaatattagggttactttttcccttcaaattatatctttaa |
24500065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 282 - 419
Target Start/End: Original strand, 24499406 - 24499543
Alignment:
| Q |
282 |
agatgtgtctttgacctggttgatgttggatactgacactgaaaaaccctaacacaatattattttgtttgagggtgaaaccctagcacaatattatcta |
381 |
Q |
| |
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|||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24499406 |
agatgtttctttgacctggtcgatgttggatactgccactgaaaaaccctaacacaatattattttgtttgagggtgaaaccctagcacaatattatcta |
24499505 |
T |
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| Q |
382 |
cgtacaaaaataaaacactttcaatacaatgaatttta |
419 |
Q |
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| T |
24499506 |
cttacaaaaataaaacactttcaacacaatgaatttta |
24499543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 7 - 204
Target Start/End: Original strand, 24499125 - 24499328
Alignment:
| Q |
7 |
acaattttcctcttcttggcaagttttaggtatcagtcaatattaataacaaaaactaatattcatggacacgatggcaaatgaacat------nnnnnn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24499125 |
acaattttcctcttcttggcaagttttaggtatcagtcaatattaataacaaaaactaatattcatggacacgatggcaaatgaacataaaaaaaaaaaa |
24499224 |
T |
|
| Q |
101 |
nnnnnnnnnntcatacaaattcatagcacacgcaattcaaagcaaaacatatctcagcattaaggtgagtaaatatgcggtacaagctatgaagcacacg |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||| |
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| T |
24499225 |
aaaaaagaaatcatacgaattcatagcacacgcaattcaaagcaaaacatatctcagcattaaggtgagtaaatatgcggtacaaactataaagcatacg |
24499324 |
T |
|
| Q |
201 |
caat |
204 |
Q |
| |
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|||| |
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|
| T |
24499325 |
caat |
24499328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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