View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1743-Insertion-7 (Length: 398)

Name: NF1743-Insertion-7
Description: NF1743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1743-Insertion-7
NF1743-Insertion-7
[»] chr3 (1 HSPs)
chr3 (62-398)||(47894157-47894512)


Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 62 - 398
Target Start/End: Complemental strand, 47894512 - 47894157
Alignment:
Q  62 tttatttctttt-gcatcattcaactatacaaagtaaaatcatactcttccatccagattcagttaacaagttccgcaacccatccaatatcagggacag 160  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47894512 tttatttctttttgcatcattcaactatacaaagtaaaatcatactcttccatccagattcagttaacaagttccgcaacccatccaatatcagggacag 47894413  T
Q  161 ggaccgaaacaacaccatcgtttgagttcaacctaccagatttcgcatagattttggctctaagatctcttcctgattccaccctctccataccaacccc 260  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47894412 ggaccgaaacaacaccatcgtttgagttcaacctaccaaatttctcatagattttggctctaagatctcttcctgattccaccctctccataccaacccc 47894313  T
Q  261 ttcatagtttgatggaagactcaaaaaaccacctcgtgg------------------agaacccatcttagacaccggactccattcatcaaccctaaca 342  Q
    |||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||||||||||||||||||||||    
T  47894312 ttcatagtttgatggaagactcaaaaaaccacctcgtggtcgtggagaaccaaacacagaacccatcttagacaccggactccattcatcaaccctaaca 47894213  T
Q  343 ctcctcatgaagccaactaattccctcacgttcaccggtgggacaccgtatcgaga 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47894212 ctcctcatgaagccaactaattccctcacgttcaccggtgggacaccgtatcgaga 47894157  T

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